Browse Element(s) Details


OsAffx.15915.1.S1_at

Description tigr:9634.m04243
TID=OsAffx.15915.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4387011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43840Os.17305.1.A1_s_at11/116+26398338..26404234Protein kinase domain containing protein, expressed
LOC_Os06g43850Os.12365.1.S1_at10/116+26407107..26409933ATP synthase delta chain, mitochondrial precursor, putative, expressed
LOC_Os06g43850Os.57459.1.S1_x_at1/116+26407107..26409933ATP synthase delta chain, mitochondrial precursor, putative, expressed
LOC_Os06g43860Os.4608.3.A1_a_at11/116+26410491..26413838Homeobox protein knotted-1-like 3, putative, expressed
LOC_Os06g43870OsAffx.15915.1.S1_at11/116+26422833..26426811expressed protein
LOC_Os06g43880Os.50648.1.S1_at11/116+26434370..26438320homogentisic acid geranylgeranyl transferase, putative, expressed
LOC_Os06g43890OsAffx.28090.1.S1_at11/116+26439416..26440928hypothetical protein
LOC_Os06g43900Os.12024.1.S1_at10/116+26441687..26443890Plastid ribosomal protein L35, putative, expressed
LOC_Os06g43910OsAffx.28091.1.S1_at11/116+26449764..26453699myb-like DNA-binding domain, SHAQKYF class family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15915.1.S1_at--994--10311Chr06:26423389..26423413 (25 bp)
TTTCTCTTTTGTGCACATGTGGCGT
LOC_Os06g43870
OsAffx.15915.1.S1_at--968--4571Chr06:26423344..26423368 (25 bp)
GCGCTGAGTGCGCAATCATCATAAA
LOC_Os06g43870
OsAffx.15915.1.S1_at--760--3711Chr06:26423246..26423270 (25 bp)
CTAAAAGTAGAGTTCCCCTGAGCCT
LOC_Os06g43870
OsAffx.15915.1.S1_at--550--831Chr06:26423217..26423241 (25 bp)
ATGGAGAACTAGTGGTCCCCTGGCA
LOC_Os06g43870
OsAffx.15915.1.S1_at--533--5271Chr06:26423188..26423212 (25 bp)
GAATGCATGCTGTCCTTCGATATTT
LOC_Os06g43870
OsAffx.15915.1.S1_at--765--7451Chr06:26423148..26423172 (25 bp)
GTGTGTGCTTTACTTCGTCGTCCTA
LOC_Os06g43870
OsAffx.15915.1.S1_at--165--1311Chr06:26422975..26422999 (25 bp)
AGATGTCGATTTCCATGCTTTCTTT
LOC_Os06g43870
OsAffx.15915.1.S1_at--765--10351Chr06:26422952..26422976 (25 bp)
TTTTTTGACCATACACGAACTGCCC
LOC_Os06g43870
OsAffx.15915.1.S1_at--416--10451Chr06:26422923..26422947 (25 bp)
TTAGCTTTGCCGCATGAGCACGTAT
LOC_Os06g43870
OsAffx.15915.1.S1_at--286--3351Chr06:26422905..26422929 (25 bp)
CACGTATTTGTTTTGCGCGGTGAAA
LOC_Os06g43870
OsAffx.15915.1.S1_at--746--2311Chr06:26422883..26422907 (25 bp)
AAAGGTGCGGTGTCACTGCATGTGT
LOC_Os06g43870
Target Sequence 
TTTCTCTTTTGTGCACATGTGGCGTGCAATCGCTTCCAGGTTGGGGCGCTGAGTGCGCAATCATCATAAAACCCAAATAA
AAATTCTGCATGTTTGATCAGTTGGTATAGCTTAAAGCATAAGTGATAGAACTTTCCAACTTGCTAAAAGTAGAGTTCCC
CTGAGCCTCCCAATGGAGAACTAGTGGTCCCCTGGCATTGTGAATGCATGCTGTCCTTCGATATTTTCTCTCTCTTCCTT
GGTGTGTGCTTTACTTCGTCGTCCTAGGCTCTTCCTGGCTTCCTAGGAGAAGAGTGCTATGTGTGTGGCTTGGTTTGGTT
TGGTGGCGATCTTCACTCCACATCCCTCTCAACCACCGTTTGTCCTTTGAAAACGGATGACAACCGGTGCTGATGATAAG
CCTTTCGCAGGTTTAGATGTCGATTTCCATGCTTTCTTTTTTTGACCATACACGAACTGCCCGGGGTTAGCTTTGCCGCA
TGAGCACGTATTTGTTTTGCGCGGTGAAAGGTGCGGTGTCACTGCATGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15915.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis