Browse Element(s) Details


OsAffx.5099.1.S1_at

Description tigr:9634.m04253
TID=OsAffx.5099.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4397010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43940Os.27468.1.S1_at11/116+26470846..26472966expressed protein
LOC_Os06g43950OsAffx.5098.1.S1_at11/116+26477482..26478274expressed protein
LOC_Os06g43960Os.53651.1.S1_at11/116+26481248..26482813expressed protein
LOC_Os06g43960Os.16254.1.S1_at2/116+26481248..26482813expressed protein
LOC_Os06g43970OsAffx.5099.1.S1_at10/116+26488450..26488888hypothetical protein
LOC_Os06g43980Os.51521.1.S1_at11/116+26490477..26493004expressed protein
LOC_Os06g43980Os.51521.1.S2_at10/116+26490477..26493004expressed protein
LOC_Os06g43980OsAffx.15916.1.S1_at1/116+26490477..26493004expressed protein
LOC_Os06g43990Os.16011.1.A1_at11/116+26495540..26497431expressed protein
LOC_Os06g44000OsAffx.28092.1.S1_at11/116+26499618..26500169hypothetical protein
LOC_Os06g44010Os.50015.1.S1_at11/116+26509009..26510702WRKY2 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5099.1.S1_at--1072--6371Chr06:26488498..26488664 (25 bp)
GATCCCTTGAACACATCTCAGTTTG
LOC_Os06g43970
OsAffx.5099.1.S1_at--649--451NONE
ATCTCAGTTTGCAGTAGTGCGTCGA
NONE
OsAffx.5099.1.S1_at--709--5011Chr06:26488664..26488688 (25 bp)
GCAGTAGTGCGTCGAACTGTACACG
LOC_Os06g43970
OsAffx.5099.1.S1_at--204--5471Chr06:26488677..26488701 (25 bp)
GAACTGTACACGCACGCCCGCGAGA
LOC_Os06g43970
OsAffx.5099.1.S1_at--867--5091Chr06:26488688..26488712 (25 bp)
GCACGCCCGCGAGAGAACACAGTAA
LOC_Os06g43970
OsAffx.5099.1.S1_at--709--6171Chr06:26488770..26488794 (25 bp)
GAGGATGGCATTCTGCATTCCCAGG
LOC_Os06g43970
OsAffx.5099.1.S1_at--905--9051Chr06:26488783..26488807 (25 bp)
TGCATTCCCAGGTTTCCAACGAATC
LOC_Os06g43970
OsAffx.5099.1.S1_at--174--10691Chr06:26488796..26488820 (25 bp)
TTCCAACGAATCCACTCTTTTCTGA
LOC_Os06g43970
OsAffx.5099.1.S1_at--210--591Chr06:26488805..26488829 (25 bp)
ATCCACTCTTTTCTGATGGTAGATG
LOC_Os06g43970
OsAffx.5099.1.S1_at--161--6953Chr06:26488823..26488847 (25 bp)
GTAGATGTGCAATTTTCTCGCCACG
LOC_Os06g43970
OsAffx.5099.1.S1_at--718--171Chr06:26488834..26488858 (25 bp)
ATTTTCTCGCCACGTTTCCAACAAG
LOC_Os06g43970
Target Sequence 
GATCCCTTGAACACATCTCAGTTTGCAGTAGTGCGTCGAACTGTACACGCACGCCCGCGAGAGAACACAGTAAGGAGAGG
AGAGAATGGAAGGAGGAGAAGGGGTGGTGTTGGTGGTGGCGGCGGCGGAGGAGGATGGCATTCTGCATTCCCAGGTTTCC
AACGAATCCACTCTTTTCTGATGGTAGATGTGCAATTTTCTCGCCACGTTTCCAACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5099.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis