Browse Element(s) Details


OsAffx.28092.1.S1_at

Description tigr:9634.m04256
TID=OsAffx.28092.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4400011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43950OsAffx.5098.1.S1_at11/116+26477482..26478274expressed protein
LOC_Os06g43960Os.53651.1.S1_at11/116+26481248..26482813expressed protein
LOC_Os06g43960Os.16254.1.S1_at2/116+26481248..26482813expressed protein
LOC_Os06g43970OsAffx.5099.1.S1_at10/116+26488450..26488888hypothetical protein
LOC_Os06g43980Os.51521.1.S1_at11/116+26490477..26493004expressed protein
LOC_Os06g43980Os.51521.1.S2_at10/116+26490477..26493004expressed protein
LOC_Os06g43980OsAffx.15916.1.S1_at1/116+26490477..26493004expressed protein
LOC_Os06g43990Os.16011.1.A1_at11/116+26495540..26497431expressed protein
LOC_Os06g44000OsAffx.28092.1.S1_at11/116+26499618..26500169hypothetical protein
LOC_Os06g44010Os.50015.1.S1_at11/116+26509009..26510702WRKY2 protein, putative, expressed
LOC_Os06g44020OsAffx.15917.1.S1_at11/116+26514060..26515821hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28092.1.S1_at--417--1811Chr06:26499748..26499772 (25 bp)
ACCCGGCAACAGCAGATCTGGCGAC
LOC_Os06g44000
OsAffx.28092.1.S1_at--275--1531Chr06:26499758..26499782 (25 bp)
AGCAGATCTGGCGACAGCGCAACGA
LOC_Os06g44000
OsAffx.28092.1.S1_at--836--8471Chr06:26499766..26499790 (25 bp)
TGGCGACAGCGCAACGACAACTGAC
LOC_Os06g44000
OsAffx.28092.1.S1_at--642--2591Chr06:26499778..26499802 (25 bp)
AACGACAACTGACGACGGTGACGGC
LOC_Os06g44000
OsAffx.28092.1.S1_at--275--8371Chr06:26499821..26499845 (25 bp)
GGCGTCCGGCAACGATGACTTCAAC
LOC_Os06g44000
OsAffx.28092.1.S1_at--15--1891Chr06:26499832..26499856 (25 bp)
ACGATGACTTCAACTGCAGCAATGG
LOC_Os06g44000
OsAffx.28092.1.S1_at--915--8451Chr06:26499991..26500015 (25 bp)
TGGCCATCCGGATAGCCAGTCTGTT
LOC_Os06g44000
OsAffx.28092.1.S1_at--325--313Chr06:26500002..26500026 (25 bp)
ATAGCCAGTCTGTTGGAGGGTGAAA
LOC_Os06g44000
OsAffx.28092.1.S1_at--180--7712Chr06:26500019..26500043 (25 bp)
GGGTGAAATTGAGCCAAAATTGCCA
LOC_Os06g44000
OsAffx.28092.1.S1_at--19--8051Chr06:26500079..26500103 (25 bp)
GGAGATGCTCTTAGTTGGCGAAAAG
LOC_Os06g44000
OsAffx.28092.1.S1_at--606--2231Chr06:26500104..26500128 (25 bp)
AAATTGTTTTTAGTATCACATCGGA
LOC_Os06g44000
Target Sequence 
ACCCGGCAACAGCAGATCTGGCGACAGCGCAACGACAACTGACGACGGTGACGGCGCTGGTGCCGACGGCGGCGGCGTCC
GGCAACGATGACTTCAACTGCAGCAATGGCATCTCGACGACGATGGTAGCGGAGAGAGAAAGGGGGAGAGGAATGCTGTC
GGCGTGGGACCCACAATTGGCTAGGCTATTTTGGCTGGCCAAATTTGGCCAGTGGGAGGAGGACTTTGGCCAGCCAGATG
GCTTGGCCATCCGGATAGCCAGTCTGTTGGAGGGTGAAATTGAGCCAAAATTGCCAAAATTTAACTTGGTGAGGGGAATA
AGGAGGCTGTTGGAGATGCTCTTAGTTGGCGAAAAGAAATTGTTTTTAGTATCACATCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28092.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis