Browse Element(s) Details


OsAffx.15917.1.S1_at

Description tigr:9634.m04258
TID=OsAffx.15917.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4402011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43980Os.51521.1.S1_at11/116+26490477..26493004expressed protein
LOC_Os06g43980Os.51521.1.S2_at10/116+26490477..26493004expressed protein
LOC_Os06g43980OsAffx.15916.1.S1_at1/116+26490477..26493004expressed protein
LOC_Os06g43990Os.16011.1.A1_at11/116+26495540..26497431expressed protein
LOC_Os06g44000OsAffx.28092.1.S1_at11/116+26499618..26500169hypothetical protein
LOC_Os06g44010Os.50015.1.S1_at11/116+26509009..26510702WRKY2 protein, putative, expressed
LOC_Os06g44020OsAffx.15917.1.S1_at11/116+26514060..26515821hypothetical protein
LOC_Os06g44030Os.27240.1.S1_at11/116+26528308..26537025WD40 associated region in TFIID subunit family protein, expressed
LOC_Os06g44030Os.14421.2.S1_x_at1/116+26528308..26537025WD40 associated region in TFIID subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15917.1.S1_at--564--891Chr06:26514141..26514165 (25 bp)
AGGCGAGGCGACTACTACTACTTGT
LOC_Os06g44020
OsAffx.15917.1.S1_at--293--9891Chr06:26514153..26514177 (25 bp)
TACTACTACTTGTCGGTCCTGGACC
LOC_Os06g44020
OsAffx.15917.1.S1_at--804--2351Chr06:26515408..26515432 (25 bp)
AAAGCTGTGAGCGAACGCGGCGACT
LOC_Os06g44020
OsAffx.15917.1.S1_at--548--1891Chr06:26515435..26515459 (25 bp)
ACGTACGGCACCACTTGCTTGTTTG
LOC_Os06g44020
OsAffx.15917.1.S1_at--763--10351Chr06:26515453..26515477 (25 bp)
TTGTTTGTTCCCCAAGAGGTCACTG
LOC_Os06g44020
OsAffx.15917.1.S1_at--981--1011Chr06:26515469..26515493 (25 bp)
AGGTCACTGGCGGAAGCCCGCAAAG
LOC_Os06g44020
OsAffx.15917.1.S1_at--366--4111Chr06:26515487..26515511 (25 bp)
CGCAAAGTATTAGCCGGATTCGGGT
LOC_Os06g44020
OsAffx.15917.1.S1_at--45--2971Chr06:26515594..26515618 (25 bp)
AATGGCGGTGGTCCTGCATGCTTCT
LOC_Os06g44020
OsAffx.15917.1.S1_at--936--631Chr06:26515611..26515635 (25 bp)
ATGCTTCTCCGGCTTGCACTACAAG
LOC_Os06g44020
OsAffx.15917.1.S1_at--151--6311Chr06:26515702..26515726 (25 bp)
GATGAGGTTGCACCATCGGCTCTCC
LOC_Os06g44020
OsAffx.15917.1.S1_at--1076--3311Chr06:26515735..26515759 (25 bp)
CACATTGCTCCCCAACAGAGGAAAA
LOC_Os06g44020
Target Sequence 
AGGCGAGGCGACTACTACTACTTGTCGGTCCTGGACCTTGACTCGCTCTCTCCTCTCGCCGTCTCGCGGCGGCGGCGGCT
GCTGTCCGAGTGGCCGTGCGTCGCGTGGTGGAAAGCTGTGAGCGAACGCGGCGACTGCACGTACGGCACCACTTGCTTGT
TTGTTCCCCAAGAGGTCACTGGCGGAAGCCCGCAAAGTATTAGCCGGATTCGGGTGGCGGCGCGGATTCAGGCAGATGGC
GGCGTGGGCCCTCTTGCTCGCGTCGGCAAGGGCGACGGCGACGCTGGACCGACGGACAATGGCGGTGGTCCTGCATGCTT
CTCCGGCTTGCACTACAAGGCGCCACTGCCTCGACCATCGGCGGGAGGCCACCGATGCGGCGCCGTTGCCACGCCCTCGG
TCACCGATGAGGTTGCACCATCGGCTCTCCTTCTTGGCCACATTGCTCCCCAACAGAGGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15917.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis