Browse Element(s) Details


Os.14421.2.S1_x_at

Description gb:AK111572.1
DB_XREF= gi:37988235
TID=Os.14421.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14421 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023021I24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013072E21, full insert sequence.
FL= gb:AK111572.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1052011/11WD40 associated region in TFIID subunit family protein, expressed
LOC_Os06g440301/11WD40 associated region in TFIID subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10470Os.41695.5.S1_x_at9/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.3.S1_x_at9/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.2.S1_x_at8/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.15.S1_s_at6/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.4.S1_x_at1/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10480Os.7774.1.S1_at8/117+5639207..5640443expressed protein
LOC_Os07g10480Os.7774.1.S1_x_at5/117+5639207..5640443expressed protein
LOC_Os07g10490Os.7230.1.S1_at11/117+5643930..5649527Zeta-carotene desaturase, chloroplast precursor, putative, expressed
LOC_Os07g10500Os.10469.1.S1_at3/117+5653417..5655273Ubiquinol-cytochrome c reductase complex 14 kDa protein, putative
LOC_Os07g10510OsAffx.16196.1.S1_at11/117+5657352..5657573hypothetical protein
LOC_Os07g10520Os.14421.2.S1_x_at11/117+5658074..5666040WD40 associated region in TFIID subunit family protein, expressed
LOC_Os07g10530Os.6633.1.S1_at11/117+5680311..5683565Carboxyl-terminal peptidase, putative, expressed
LOC_Os07g10540Os.25261.1.S1_at11/117+5690180..5698183aminopeptidase P, cytosolic, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14421.2.S1_x_at--499--251Chr07:5664246..5664270 (25 bp)
ATATCTTCTGGTCGTTGTGTTTCAC
LOC_Os07g10520
Os.14421.2.S1_x_at--508--351Chr07:5664283..5664307 (25 bp)
ATAACTCTTGTGTGTGGTCGCTTGC
LOC_Os07g10520
Os.14421.2.S1_x_at--671--8531Chr07:5665306..5665330 (25 bp)
TGGATCAGCCGACTGCACTGTAAAA
LOC_Os07g10520
Os.14421.2.S1_x_at--40--2431Chr07:5665327..5665351 (25 bp)
AAAACTATGGGATGTCGCCTCCAGC
LOC_Os07g10520
Os.14421.2.S1_x_at--70--6831Chr07:5665517..5665638 (25 bp)
GTTTACACTCTGCAGTTTTCTCGGA
LOC_Os07g10520
Os.14421.2.S1_x_at--103--8211Chr07:5665639..5665663 (25 bp)
GGAATCTTTTATTTGCGGCTGGTGC
LOC_Os07g10520
Os.14421.2.S1_x_at--896--8312Chr07:5665674..5665698 (25 bp)
GGCTCCTAAGCTTCTGTATGTTCTA
LOC_Os07g10520
Os.14421.2.S1_x_at--342--7531Chr07:5665764..5665788 (25 bp)
GTGGCAGGTGTCGTAGCATCTACAT
LOC_Os07g10520
Os.14421.2.S1_x_at--1013--9871Chr07:5665784..5665808 (25 bp)
TACATTTTCCCTTAGTGATCCCAGT
LOC_Os07g10520
Os.14421.2.S1_x_at--988--9811Chr07:5665918..5665942 (25 bp)
TAACTTTACTCTACGTGTGCCATAC
LOC_Os07g10520
Os.14421.2.S1_x_at--66--7291Chr07:5665934..5665959 (25 bp)
GTGCCATACTGTTTCAACCATCATT
LOC_Os07g10520
Target Sequence 
ATATCTTCTGGTCGTTGTGTTTCACCGCTAGTGGGACATAACTCTTGTGTGTGGTCGCTTGCTTACAGCTGTGAAGGGNC
ATTACTNTGCATCTGGATCAGCCGACTGCACTGTAAAACTATGGGATGTCGCCTCCAGCACTAAGACTCTTAAGATGGAT
GATACCNAAGGTGGTTCAGCTAACCGACTGAGGATGCTGAAAGCCCTCCCTACAAAATCAACCCCTGTTTACACTCTGCA
GTTTTCTCGGAGGAATCTTTTATTTGCGGCTGGTGCTCCCTCACTTGGCTCCTAAGCTTCTGTATGTTCTATAGAGTACA
AGTAGCATTCTTTCAGTTTTTGGTTTTAGTAAGTAGTAAAGTTGATGTCTACTGGGGTGGCAGGTGTCGTAGCATCTACA
TTTTCCCTTAGTGATCCCAGTGAACCTAGGGGTAAATTGTAGCACTGGGGCACTGCAATTCGTTGCAATATGTGTAGTGA
TGTAGCATTAGCCAGTTCAAAATATATGCAATTTCCCGTAATGATACATCTAACTTTACTCTACGTGTGCCATACTGTTT
CAACCATCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14421.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis