Browse Element(s) Details


Os.7774.1.S1_at

Description gb:AK105480.1
DB_XREF= gi:32990689
TID=Os.7774.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7774 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-A12, full insert sequence.
FL= gb:AK105480.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g104808/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10460Os.15242.1.S1_at11/117+5612114..5622021acid phosphatase SurE family protein, expressed
LOC_Os07g10470Os.41695.5.S1_x_at9/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.3.S1_x_at9/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.2.S1_x_at8/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.15.S1_s_at6/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.4.S1_x_at1/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10480Os.7774.1.S1_at8/117+5639207..5640443expressed protein
LOC_Os07g10480Os.7774.1.S1_x_at5/117+5639207..5640443expressed protein
LOC_Os07g10490Os.7230.1.S1_at11/117+5643930..5649527Zeta-carotene desaturase, chloroplast precursor, putative, expressed
LOC_Os07g10500Os.10469.1.S1_at3/117+5653417..5655273Ubiquinol-cytochrome c reductase complex 14 kDa protein, putative
LOC_Os07g10510OsAffx.16196.1.S1_at11/117+5657352..5657573hypothetical protein
LOC_Os07g10520Os.14421.2.S1_x_at11/117+5658074..5666040WD40 associated region in TFIID subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7774.1.S1_at--387--9212Chr07:5639166..5639190 (25 bp)
TGCCAAGAACAGTGCCGCTGCACCT
NONE
Os.7774.1.S1_at--971--3371Chr07:5639196..5639219 (24 bp)
CAGCCATCTCCATGACGAAGCAAGA
NONE
Os.7774.1.S1_at--625--8931Chr07:5639208..5639658 (25 bp)
TGACGAAGCAAGAACTACAGATCAT
LOC_Os07g10480
Os.7774.1.S1_at--1038--6431Chr07:5639653..5639677 (25 bp)
GATCATGAGATCAACAATGGCAAGG
LOC_Os07g10480
Os.7774.1.S1_at--870--3271Chr07:5639664..5639688 (25 bp)
CAACAATGGCAAGGACAGAGGGCAG
LOC_Os07g10480
Os.7774.1.S1_at--997--5111Chr07:5639862..5639886 (25 bp)
GCAAATATTTTATTCGTACACGGTA
LOC_Os07g10480
Os.7774.1.S1_at--843--1911Chr07:5639881..5639905 (25 bp)
ACGGTATCAGGTCACAAATATCTAT
LOC_Os07g10480
Os.7774.1.S1_at--1026--7791Chr07:5639890..5639914 (25 bp)
GGTCACAAATATCTATCAACTTAAG
LOC_Os07g10480
Os.7774.1.S1_at--921--351Chr07:5639904..5639928 (25 bp)
ATCAACTTAAGTCTCGACCTCAAGG
LOC_Os07g10480
Os.7774.1.S1_at--409--3412Chr07:5640403..5640427 (25 bp)
CAGCACAAGCTATTGATGAATTCAA
LOC_Os07g10480
Os.7774.1.S1_at--563--5951Chr07:5640462..5640486 (25 bp)
GAGAAGAACTTCTGTGGTTGGAAGT
NONE
Target Sequence 
TGCCAAGAACAGTGCCGCTGCACCTCATCCCAGCCATCTCCATGACGAAGCAAGAACTACAGATCATGAGATCAACAATG
GCAAGGACAGAGGGCAGGTAAATAAAATGGGAGTTGTGAAAGTGATTGGCAAATATTTTATTCGTACACGGTATCAGGTC
ACAAATATCTATCAACTTAAGTCTCGACCTCAAGGAGTTCCTCTAAGAGTCAGGAAAATGCTAAAATCAGCACAAGCTAT
TGATGAATTCAATCAAGATGGAGTTTGAACAGAAAATTTGAGATGGGAGAAGAACTTCTGTGGTTGGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7774.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis