Browse Element(s) Details


Os.10469.1.S1_at

Description gb:AK121368.1
DB_XREF= gi:37990991
TID=Os.10469.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10469 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-015-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023125I03, full insert sequence.
FL= gb:AK072032.1 gb:AK103963.1 gb:AK121368.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g105003/11Ubiquinol-cytochrome c reductase complex 14 kDa protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10470Os.41695.5.S1_x_at9/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.3.S1_x_at9/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.2.S1_x_at8/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.15.S1_s_at6/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.4.S1_x_at1/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10480Os.7774.1.S1_at8/117+5639207..5640443expressed protein
LOC_Os07g10480Os.7774.1.S1_x_at5/117+5639207..5640443expressed protein
LOC_Os07g10490Os.7230.1.S1_at11/117+5643930..5649527Zeta-carotene desaturase, chloroplast precursor, putative, expressed
LOC_Os07g10500Os.10469.1.S1_at3/117+5653417..5655273Ubiquinol-cytochrome c reductase complex 14 kDa protein, putative
LOC_Os07g10510OsAffx.16196.1.S1_at11/117+5657352..5657573hypothetical protein
LOC_Os07g10520Os.14421.2.S1_x_at11/117+5658074..5666040WD40 associated region in TFIID subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006122biological_processmitochondrial electron transport, ubiquinol to cytochrome c
GO:0005739cellular_componentmitochondrion
GO:0008121molecular_functionubiquinol-cytochrome-c reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10469.1.S1_at--262--8311Chr07:5653614..5653638 (25 bp)
GGCTCCGGTACGACGACCTGTACGA
LOC_Os07g10500
Os.10469.1.S1_at--479--10211Chr07:5654479..5654503 (25 bp)
TATTTATCTGATATGCTAGCACTGG
LOC_Os07g10500
Os.10469.1.S1_at--708--1651Chr07:5655224..5655248 (25 bp)
AGCGCGAAGCATTGGGAGCACTCCC
LOC_Os07g10500
Os.10469.1.S1_at--439--1331Chr07:5655257..5655281 (25 bp)
AGAGGACCATCCCATGAAGCGTCTA
NONE
Os.10469.1.S1_at--946--2671Chr07:5655273..5655297 (25 bp)
AAGCGTCTACTTCGTAGGCCTGTTT
NONE
Os.10469.1.S1_at--1160--871Chr07:5655288..5655312 (25 bp)
AGGCCTGTTTCTAATTTTCTTGATG
NONE
Os.10469.1.S1_at--900--10091Chr07:5655406..5655430 (25 bp)
TATGTGAAGATACCCACCGTCAGTT
NONE
Os.10469.1.S1_at--542--7111Chr07:5655424..5655448 (25 bp)
GTCAGTTCTCCATAGATACCTTTTG
NONE
Os.10469.1.S1_at--1151--2531Chr07:5655492..5655516 (25 bp)
AACTCTATATAGCTTCACTTGGAGC
NONE
Os.10469.1.S1_at--220--2831Chr07:5655530..5655554 (25 bp)
AAGTTTTCATTGTCGCACAGACCCT
NONE
Os.10469.1.S1_at--890--3771Chr07:5655553..5655577 (25 bp)
CTCTGAGCCGTATTTTCCTGTTTTA
NONE
Target Sequence 
GGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTG
GTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGC
GAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGAAGCATTGG
GAGCACTCCCCCTGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAA
AGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAATGTGTTATGTGTA
TGCTTATTATGTGAAGATACCCACCGTCAGTTCTCCATAGATACCTTTTGGTATGACAACTGACATATGGTGTATGTTTT
GTAATCAATTTAAAACTCTATATAGCTTCACTTGGAGCTGAGTAGGTAAGAAAGTTTTCATTGTCGCACAGACCCTCTGA
GCCGTATTTTCCTGTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10469.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis