Browse Element(s) Details


Os.15242.1.S1_at

Description gb:AK058694.1
DB_XREF= gi:32968712
TID=Os.15242.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15242 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033108H16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-019-B07, full insert sequence.
FL= gb:AK058694.1 gb:AK102805.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1046011/11acid phosphatase SurE family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10410OsAffx.5281.1.S1_at11/117+5592210..5593010AP2 domain containing protein
LOC_Os07g10420Os.11633.3.S1_at11/117+5597010..5599089expressed protein
LOC_Os07g10420OsAffx.28387.1.S1_s_at11/117+5597010..5599089expressed protein
LOC_Os07g10430OsAffx.5282.1.S1_at11/117+5607013..5607330hypothetical protein
LOC_Os07g10440OsAffx.5283.1.S1_at5/117+5610538..5610913expressed protein
LOC_Os07g10460Os.15242.1.S1_at11/117+5612114..5622021acid phosphatase SurE family protein, expressed
LOC_Os07g10470Os.41695.5.S1_x_at9/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.3.S1_x_at9/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.2.S1_x_at8/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.15.S1_s_at6/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.4.S1_x_at1/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10480Os.7774.1.S1_at8/117+5639207..5640443expressed protein
LOC_Os07g10480Os.7774.1.S1_x_at5/117+5639207..5640443expressed protein
LOC_Os07g10490Os.7230.1.S1_at11/117+5643930..5649527Zeta-carotene desaturase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003993molecular_functionacid phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15242.1.S1_at--183--7991Chr07:5618147..5618171 (25 bp)
GGATGATATCGACCACAAGTGCCTT
LOC_Os07g10460
Os.15242.1.S1_at--1049--6491Chr07:5618009..5618139 (25 bp)
GATATATTACTGTTACCCCTTTGGG
LOC_Os07g10460
Os.15242.1.S1_at--524--10251Chr07:5617990..5618014 (25 bp)
TTTGGGAGCTCTATCCCGCGCAGAA
LOC_Os07g10460
Os.15242.1.S1_at--1105--10131Chr07:5617979..5618003 (25 bp)
TATCCCGCGCAGAAGCTGATGTCAT
LOC_Os07g10460
Os.15242.1.S1_at--265--7131Chr07:5617959..5617983 (25 bp)
GTCATACCATACTACAAAGCTTGCT
LOC_Os07g10460
Os.15242.1.S1_at--604--2351Chr07:5617947..5617968 (22 bp)
AAAGCTTGCTTGTCACGTCTGTGAT
LOC_Os07g10460
Os.15242.1.S1_at--49--411Chr07:5612345..5612369 (25 bp)
ATCAGGATACTTTTGTGGCCCACTA
LOC_Os07g10460
Os.15242.1.S1_at--617--10251Chr07:5612334..5612358 (25 bp)
TTTGTGGCCCACTAAACTGAAAAAG
LOC_Os07g10460
Os.15242.1.S1_at--42--6611Chr07:5612252..5612276 (25 bp)
GATTGTTACTGATGTATTGCCATAT
LOC_Os07g10460
Os.15242.1.S1_at--977--9191Chr07:5612235..5612259 (25 bp)
TGCCATATTATGTACTTCCGTGATT
LOC_Os07g10460
Os.15242.1.S1_at--759--7011Chr07:5612224..5612248 (25 bp)
GTACTTCCGTGATTATTCAGAGCAT
LOC_Os07g10460
Target Sequence 
GGATGATATCGACCACAAGTGCCTTGTAGATGGATATATTACTGTTACCCCTTTGGGAGCTCTATCCCGCGCAGAAGCTG
ATGTCATACCATACTACAAAGCTTGCTTGTCACGTCTGTGATCAGGATACTTTTGTGGCCCACTAAACTGAAAAAGTTGG
TGTCATGGTTGCAAGTTGCAAATAAAGTTGCATGAATTTCAGTNATTCTAGATGATTGTTACTGATGTATTGCCATATTA
TGTACTTCCGTGATTATTCAGAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15242.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis