Browse Element(s) Details


Os.6633.1.S1_at

Description gb:AK103449.1
DB_XREF= gi:32988658
TID=Os.6633.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6633 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033129H24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033129H24, full insert sequence.
FL= gb:AK103449.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1053011/11Carboxyl-terminal peptidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10510OsAffx.16196.1.S1_at11/117+5657352..5657573hypothetical protein
LOC_Os07g10520Os.14421.2.S1_x_at11/117+5658074..5666040WD40 associated region in TFIID subunit family protein, expressed
LOC_Os07g10530Os.6633.1.S1_at11/117+5680311..5683565Carboxyl-terminal peptidase, putative, expressed
LOC_Os07g10540Os.25261.1.S1_at11/117+5690180..5698183aminopeptidase P, cytosolic, putative, expressed
LOC_Os07g10550Os.52905.1.S2_at11/117+5701086..5709587cyclin, putative, expressed
LOC_Os07g10550Os.52905.1.S1_at11/117+5701086..5709587cyclin, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6633.1.S1_at--623--7711Chr07:5683145..5683169 (25 bp)
GGGTGGGCACCTACACCGAGCAGTC
LOC_Os07g10530
Os.6633.1.S1_at--1034--3451Chr07:5683165..5683189 (25 bp)
CAGTCCAATTGCTACGATGTTCAGA
LOC_Os07g10530
Os.6633.1.S1_at--363--4851Chr07:5683175..5683199 (25 bp)
GCTACGATGTTCAGAACGGCAACAA
LOC_Os07g10530
Os.6633.1.S1_at--1153--10691Chr07:5683251..5683275 (25 bp)
TTGCCCATGAATTTGGTGATGAAGA
LOC_Os07g10530
Os.6633.1.S1_at--27--5191Chr07:5683329..5683353 (25 bp)
GCAAGTGTAACCAAGCATTAATCAT
LOC_Os07g10530
Os.6633.1.S1_at--877--6591Chr07:5683366..5683390 (25 bp)
GATTGATCTGCATCTGTTTCTTAAT
LOC_Os07g10530
Os.6633.1.S1_at--1147--1651Chr07:5683393..5683417 (25 bp)
AGCCCTAGGTAGTATATGTGTATCT
LOC_Os07g10530
Os.6633.1.S1_at--552--7431Chr07:5683410..5683434 (25 bp)
GTGTATCTTTCCTACTGATTTTCTT
LOC_Os07g10530
Os.6633.1.S1_at--36--3771Chr07:5683441..5683465 (25 bp)
CTCTTCATTAGTTTTTTCTTCTTCT
LOC_Os07g10530
Os.6633.1.S1_at--498--9571Chr07:5683460..5683484 (25 bp)
TCTTCTTTTTCTGATGTGCCATGTA
LOC_Os07g10530
Os.6633.1.S1_at--412--6271Chr07:5683472..5683496 (25 bp)
GATGTGCCATGTAAAAGTTTCTGAA
LOC_Os07g10530
Target Sequence 
GGGTGGGCACCTACACCGAGCAGTCCAATTGCTACGATGTTCAGAACGGCAACAATGGCGACTGGGGCACCTACTTNCTA
CTATGGCGGCCCGGGGAAGAACTNCGANTTGCCCATGAATTTGGTGATGAAGAAGCTGATGATATATATATATTTATATA
TATNTATATANNATATATGGTGAAGTGTGCAAGTGTAACCAAGCATTAATCATGTGTGGAATACAGATTGATCTGCATCT
GTTTCTTAATTTAGCCCTAGGTAGTATATGTGTATCTTTCCTACTGATTTTCTTTTTCTTCTCTTCATTAGTTTTTTCTT
CTTCTTTTTCTGATGTGCCATGTAAAAGTTTCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6633.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis