Browse Element(s) Details


Os.52905.1.S2_at

Description gb:AK070209.1
DB_XREF= gi:32980233
TID=Os.52905.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52905 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023044A22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023044A22, full insert sequence.
FL= gb:AK070209.1 gb:AK069835.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1055011/11cyclin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10530Os.6633.1.S1_at11/117+5680311..5683565Carboxyl-terminal peptidase, putative, expressed
LOC_Os07g10540Os.25261.1.S1_at11/117+5690180..5698183aminopeptidase P, cytosolic, putative, expressed
LOC_Os07g10550Os.52905.1.S2_at11/117+5701086..5709587cyclin, putative, expressed
LOC_Os07g10550Os.52905.1.S1_at11/117+5701086..5709587cyclin, putative, expressed
LOC_Os07g10560Os.24000.1.S1_at11/117+5722282..5724815hypothetical protein
LOC_Os07g10560OsAffx.28388.1.S1_at11/117+5722282..5724815hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52905.1.S2_at--641--1691Chr07:5701643..5701667 (25 bp)
AGCCAATCCACAGCCAACTTATGAG
LOC_Os07g10550
Os.52905.1.S2_at--566--2671Chr07:5701617..5701641 (25 bp)
AAGCCCAGCAACATTTCCTGAGGTT
LOC_Os07g10550
Os.52905.1.S2_at--484--191Chr07:5701605..5701629 (25 bp)
ATTTCCTGAGGTTGCCGGCATCAAG
LOC_Os07g10550
Os.52905.1.S2_at--1158--9931Chr07:5701576..5701600 (25 bp)
TACGACAATTTTCGCAGGGCTGCTG
LOC_Os07g10550
Os.52905.1.S2_at--477--591Chr07:5701515..5701539 (25 bp)
ATGCCACCAAGTTCTTCACATAGAT
LOC_Os07g10550
Os.52905.1.S2_at--884--6251Chr07:5701450..5701474 (25 bp)
GATGTGGCAATTTTCCGTTTATTTT
LOC_Os07g10550
Os.52905.1.S2_at--955--4951Chr07:5701410..5701434 (25 bp)
GCATATCCGTGTGCATGGTCTTAGA
LOC_Os07g10550
Os.52905.1.S2_at--441--4371Chr07:5701365..5701389 (25 bp)
CCACTCGATTCGTTCTTTATGTATA
LOC_Os07g10550
Os.52905.1.S2_at--182--9191Chr07:5701257..5701281 (25 bp)
TGCCTCTATCACGAGCTATACATGT
LOC_Os07g10550
Os.52905.1.S2_at--554--2791Chr07:5701155..5701179 (25 bp)
AAGAGGTGTCTTTCTTGAACCAGAA
LOC_Os07g10550
Os.52905.1.S2_at--61--5571Chr07:5701133..5701157 (25 bp)
GAAAGAGAAGCCTCCCTGTTGACAA
LOC_Os07g10550
Target Sequence 
AGCCAATCCACAGCCAACTTATGAGCAAGCCCAGCAACATTTCCTGAGGTTGCCGGCATCAAGTCCATACGACAATTTTC
GCAGGGCTGCTGGTTGTTAGAGGTTGAGCCTGCAGCAGCAAGTCTATCATGCCACCAAGTTCTTCACATAGATGAGCAAA
GAAAAGAAATCTCAAGCCGATAATAAACCGAATGATGTGGCAATTTTCCGTTTATTTTGAAAGAGGAATATATGCATATC
CGTGTGCATGGTCTTAGAGGGTCAACCGGATTCAACACCCACTCGATTCGTTCTTTATGTATAGCGGTATATACATATAT
ATAGGTTAATTCTTTTTTGTTTGTTTTTGCCATTGCAACGTGTAGAGAAGAAACTGTGGGGAGCAGTGCCTCTATCACGA
GCTATACATGTATGTGTGTATGTAACTTGTGTCAAATGCTGCAAATTGGAGAGTATATCATCACGGAATTGGTGTGGTCT
ATGAGAAAAAGAGGTGTCTTTCTTGAACCAGAAAGAGAAGCCTCCCTGTTGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52905.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis