Browse Element(s) Details


OsAffx.28388.1.S1_at

Description tigr:9635.m01023
TID=OsAffx.28388.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1056011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10540Os.25261.1.S1_at11/117+5690180..5698183aminopeptidase P, cytosolic, putative, expressed
LOC_Os07g10550Os.52905.1.S2_at11/117+5701086..5709587cyclin, putative, expressed
LOC_Os07g10550Os.52905.1.S1_at11/117+5701086..5709587cyclin, putative, expressed
LOC_Os07g10560Os.24000.1.S1_at11/117+5722282..5724815hypothetical protein
LOC_Os07g10560OsAffx.28388.1.S1_at11/117+5722282..5724815hypothetical protein
LOC_Os07g10570Os.11099.2.S1_x_at11/117+5735180..573596213 kDa prolamin precursor, putative, expressed
LOC_Os07g10570Os.11099.1.S1_x_at11/117+5735180..573596213 kDa prolamin precursor, putative, expressed
LOC_Os07g10570Os.8502.5.S1_x_at1/117+5735180..573596213 kDa prolamin precursor, putative, expressed
LOC_Os07g10570Os.26611.1.S1_at1/117+5735180..573596213 kDa prolamin precursor, putative, expressed
LOC_Os07g10580Os.8177.1.S1_a_at11/117+5740151..574081813 kDa prolamin precursor, putative, expressed
LOC_Os07g10580Os.16367.1.S1_at1/117+5740151..574081813 kDa prolamin precursor, putative, expressed
LOC_Os07g10580Os.11099.1.S1_x_at1/117+5740151..574081813 kDa prolamin precursor, putative, expressed
LOC_Os07g10590Os.50123.1.S1_x_at11/117+5745694..5748126Sugar transporter family protein, expressed
LOC_Os07g10600Os.2224.1.S1_a_at11/117+5749185..5755006Cycloartenol-C-24-methyltransferase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28388.1.S1_at--36--6631Chr07:5722839..5722863 (25 bp)
GTTGGTGCTAAAATCCCATACTGGA
LOC_Os07g10560
OsAffx.28388.1.S1_at--207--3891Chr07:5722819..5722843 (25 bp)
CTGGATTGCAAAAGCCTCAGTGAAT
LOC_Os07g10560
OsAffx.28388.1.S1_at--255--431Chr07:5722793..5722817 (25 bp)
ATCTTATCAGCCTAGATTTGGGAGG
LOC_Os07g10560
OsAffx.28388.1.S1_at--911--10851Chr07:5722759..5722783 (25 bp)
TTGGAAGAAACTGCCATCTCTTGCA
LOC_Os07g10560
OsAffx.28388.1.S1_at--589--4432Chr07:5722747..5722771 (25 bp)
GCCATCTCTTGCAGAATTCCTACTG
LOC_Os07g10560
OsAffx.28388.1.S1_at--1032--1532Chr07:5722718..5722742 (25 bp)
AGCATCTTCGATTGGACAACCTTCA
LOC_Os07g10560
OsAffx.28388.1.S1_at--463--10532Chr07:5722697..5722721 (25 bp)
TTCAGCTTCCTTCAGAATTCCTACT
LOC_Os07g10560
OsAffx.28388.1.S1_at--155--6351Chr07:5722624..5722648 (25 bp)
GATGCGCGACGGCAACCTTCAGAAT
LOC_Os07g10560
OsAffx.28388.1.S1_at--735--8232Chr07:5722614..5722638 (25 bp)
GGCAACCTTCAGAATTCCTACTGCT
LOC_Os07g10560
OsAffx.28388.1.S1_at--155--6271Chr07:5722439..5722463 (25 bp)
GATGTGACGGCAGCGCGACGACCAC
LOC_Os07g10560
OsAffx.28388.1.S1_at--250--3951Chr07:5722332..5722356 (25 bp)
CGGCATGGACGACCTGATACAGCAG
LOC_Os07g10560
Target Sequence 
GTTGGTGCTAAAATCCCATACTGGATTGCAAAAGCCTCAGTGAATAATCTTATCAGCCTAGATTTGGGAGGTTGTAAAAA
TTGGAAGAAACTGCCATCTCTTGCAGAATTCCTACTGCTCAAGCATCTTCGATTGGACAACCTTCAGCTTCCTTCAGAAT
TCCTACTGCTCAACCAACTTCGCGCGACGGCGGCGGAGACGGCGGCGGCGGGCTCGATGCGCGACGGCAACCTTCAGAAT
TCCTACTGCTCAAGCATCTTCGCGCGACCGCGGCGGCAGGCTCGATGCGCGACGGCCCCGGTGGACGGCGGCGGCGCGAC
AACCTCGATGCGACGGCGGCGCGACGGCCTCGATGCGACGGCGGCACGATGGCCTCGATGGGCGGCGGCGCGACAACCTC
GATGTGACGGCAGCGCGACGACCACGATGGGCGACGGCGGCGCGACGATCTTGATGGGTGACGGCGGCGCGACGGCCTCG
ATGCGACGATGGCACGGCGCAGACAGCCGGCATGGACGACCTGATACAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28388.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis