Browse Element(s) Details


Os.8177.1.S1_a_at

Description gb:AA751585
DB_XREF= gi:2798291
DB_XREF=96AS0318
CLONE=96AS0318
TID=Os.8177.1
CNT=43
FEA=FLmRNA
TIER=Stack
STK=7
UG=Os.8177 (NCBI UniGene Cluster)
UG_TITLE=MRNA for prolamin, complete cds, strain:lambda RM1
FL= gb:AB016503.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1058011/1113 kDa prolamin precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10560Os.24000.1.S1_at11/117+5722282..5724815hypothetical protein
LOC_Os07g10560OsAffx.28388.1.S1_at11/117+5722282..5724815hypothetical protein
LOC_Os07g10570Os.11099.2.S1_x_at11/117+5735180..573596213 kDa prolamin precursor, putative, expressed
LOC_Os07g10570Os.11099.1.S1_x_at11/117+5735180..573596213 kDa prolamin precursor, putative, expressed
LOC_Os07g10570Os.8502.5.S1_x_at1/117+5735180..573596213 kDa prolamin precursor, putative, expressed
LOC_Os07g10570Os.26611.1.S1_at1/117+5735180..573596213 kDa prolamin precursor, putative, expressed
LOC_Os07g10580Os.8177.1.S1_a_at11/117+5740151..574081813 kDa prolamin precursor, putative, expressed
LOC_Os07g10580Os.16367.1.S1_at1/117+5740151..574081813 kDa prolamin precursor, putative, expressed
LOC_Os07g10580Os.11099.1.S1_x_at1/117+5740151..574081813 kDa prolamin precursor, putative, expressed
LOC_Os07g10590Os.50123.1.S1_x_at11/117+5745694..5748126Sugar transporter family protein, expressed
LOC_Os07g10600Os.2224.1.S1_a_at11/117+5749185..5755006Cycloartenol-C-24-methyltransferase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8177.1.S1_a_at--466--9031Chr07:5740529..5740553 (25 bp)
TGCAGCAGGTCGGTGTTGTCTACTT
LOC_Os07g10580
Os.8177.1.S1_a_at--1095--1511Chr07:5740532..5740556 (25 bp)
AGCAGGTCGGTGTTGTCTACTTTGA
LOC_Os07g10580
Os.8177.1.S1_a_at--608--1031Chr07:5740535..5740559 (25 bp)
AGGTCGGTGTTGTCTACTTTGATCA
LOC_Os07g10580
Os.8177.1.S1_a_at--402--3731Chr07:5740574..5740598 (25 bp)
CTCAAGCTTTGCTGGCCTTAAACTT
LOC_Os07g10580
Os.8177.1.S1_a_at--1157--1551Chr07:5740578..5740602 (25 bp)
AGCTTTGCTGGCCTTAAACTTGCCA
LOC_Os07g10580
Os.8177.1.S1_a_at--537--4711Chr07:5740584..5740608 (25 bp)
GCTGGCCTTAAACTTGCCATCCATA
LOC_Os07g10580
Os.8177.1.S1_a_at--930--7491Chr07:5740610..5740634 (25 bp)
GTGGTATCTATCCTAACTACTACAT
LOC_Os07g10580
Os.8177.1.S1_a_at--665--10131Chr07:5740618..5740642 (25 bp)
TATCCTAACTACTACATTGCTCCGA
LOC_Os07g10580
Os.8177.1.S1_a_at--321--3731Chr07:5740622..5740646 (25 bp)
CTAACTACTACATTGCTCCGAGGAG
LOC_Os07g10580
Os.8177.1.S1_a_at--854--2531Chr07:5740624..5740648 (25 bp)
AACTACTACATTGCTCCGAGGAGCA
LOC_Os07g10580
Os.8177.1.S1_a_at--796--4231Chr07:5740639..5740663 (25 bp)
CCGAGGAGCATTCCCACCGTTGGTG
LOC_Os07g10580
Target Sequence 
TGCAGCAGGTCGGTGTTGTCTACTTTGATCAGACTCAAGCTCAAGCTCAAGCTTTGCTGGCCTTAAACTTGCCATCCATA
TGTGGTATCTATCCTAACTACTACATTGCTCCGAGGAGCATTCCCACCGTTGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8177.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis