Browse Element(s) Details


Os.2224.1.S1_a_at

Description gb:AF042332.1
DB_XREF= gi:3560530
TID=Os.2224.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.2224 (NCBI UniGene Cluster)
DEF=Oryza sativa subsp. japonica cycloartenol-C24-methyltransferase mRNA, complete cds.
PROD=cycloartenol-C24-methyltransferase
FL= gb:AF042332.1 gb:AK072893.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1060011/11Cycloartenol-C-24-methyltransferase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10560Os.24000.1.S1_at11/117+5722282..5724815hypothetical protein
LOC_Os07g10560OsAffx.28388.1.S1_at11/117+5722282..5724815hypothetical protein
LOC_Os07g10570Os.11099.2.S1_x_at11/117+5735180..573596213 kDa prolamin precursor, putative, expressed
LOC_Os07g10570Os.11099.1.S1_x_at11/117+5735180..573596213 kDa prolamin precursor, putative, expressed
LOC_Os07g10570Os.8502.5.S1_x_at1/117+5735180..573596213 kDa prolamin precursor, putative, expressed
LOC_Os07g10570Os.26611.1.S1_at1/117+5735180..573596213 kDa prolamin precursor, putative, expressed
LOC_Os07g10580Os.8177.1.S1_a_at11/117+5740151..574081813 kDa prolamin precursor, putative, expressed
LOC_Os07g10580Os.16367.1.S1_at1/117+5740151..574081813 kDa prolamin precursor, putative, expressed
LOC_Os07g10580Os.11099.1.S1_x_at1/117+5740151..574081813 kDa prolamin precursor, putative, expressed
LOC_Os07g10590Os.50123.1.S1_x_at11/117+5745694..5748126Sugar transporter family protein, expressed
LOC_Os07g10600Os.2224.1.S1_a_at11/117+5749185..5755006Cycloartenol-C-24-methyltransferase 1, putative, expressed
LOC_Os07g10610NANA7+5765881..5766816expressed protein
LOC_Os07g10620Os.55266.1.S1_at11/117+5767849..5769747expressed protein
LOC_Os07g10620OsAffx.5285.1.S1_at11/117+5767849..5769747expressed protein
LOC_Os07g10620OsAffx.5285.1.S1_x_at11/117+5767849..5769747expressed protein
LOC_Os07g10630Os.47755.1.S1_at11/117+5772256..5775785leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g10630Os.27728.1.S1_at1/117+5772256..5775785leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g10640OsAffx.28389.1.S1_at11/117+5778285..5779098expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006656biological_processphosphatidylcholine biosynthesis
GO:0007389biological_processpattern specification
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009825biological_processmultidimensional cell growth
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0016126biological_processsterol biosynthesis
GO:0042023biological_processDNA endoreduplication
GO:0005737cellular_componentcytoplasm
GO:0005783cellular_componentendoplasmic reticulum
GO:0000234molecular_functionphosphoethanolamine N-methyltransferase activity
GO:0003838molecular_functionsterol 24-C-methyltransferase activity
GO:0008168molecular_functionmethyltransferase activity
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2224.1.S1_a_at--1117--5292Chr07:5749895..5749919 (25 bp)
GAAGGCAGCTGAAGGTCTCGTCGAA
LOC_Os07g10600
Os.2224.1.S1_a_at--476--951Chr07:5749705..5749729 (25 bp)
AGGAAATCTTCACGCCGATGTACTT
LOC_Os07g10600
Os.2224.1.S1_a_at--339--6271Chr07:5749689..5749713 (25 bp)
GATGTACTTCTTTTTGGTTCGCAAG
LOC_Os07g10600
Os.2224.1.S1_a_at--195--7911Chr07:5749674..5749698 (25 bp)
GGTTCGCAAGCCTATCTCAGAATGA
LOC_Os07g10600
Os.2224.1.S1_a_at--857--8911Chr07:5749653..5749676 (24 bp)
TGAGCTCCCAGAACCACATTTCAGA
LOC_Os07g10600
Os.2224.1.S1_a_at--883--9391Chr07:5749417..5749441 (25 bp)
TCGTCTGTTGGTTTGCCGTGTAAAA
LOC_Os07g10600
Os.2224.1.S1_a_at--73--8851Chr07:5749386..5749410 (25 bp)
TGATCAAGGCACTTGTCTGCAGGGT
LOC_Os07g10600
Os.2224.1.S1_a_at--877--5011Chr07:5749368..5749392 (25 bp)
GCAGGGTGCCTGTTTTAGTCTAAGA
LOC_Os07g10600
Os.2224.1.S1_a_at--619--2831Chr07:5749286..5749310 (25 bp)
AAGTTTGCAGTTCATTCGCCAGTGT
LOC_Os07g10600
Os.2224.1.S1_a_at--890--2931Chr07:5749243..5749267 (25 bp)
AAGGCACCTGCTTGATAGCTTTCTT
LOC_Os07g10600
Os.2224.1.S1_a_at--367--4891Chr07:5749226..5749250 (25 bp)
GCTTTCTTTTCATATTGTTCTTCGA
LOC_Os07g10600
Target Sequence 
GAAGGCAGCTGAAGGTCTCGTCGAAGGTGGCAAGAAGGAAATCTTCACGCCGATGTACTTCTTTTTGGTTCGCAAGCCTA
TCTCAGAATGAGCTCCCAGAACCACATTTCAGAGATAAGGCGAGGAGTTTGAAAGAAACATTATGGCGGTCAAAGAAACA
CCTGATGAAGCTCAGAAGCTTGAAGAGTTCTTATGCGTACGAAGAGATGCTGAAATGTGTTTAACTGGTGAATTTTCGTC
TGTTGGTTTGCCGTGTAAAAACCGTTTGATCAAGGCACTTGTCTGCAGGGTGCCTGTTTTAGTCTAAGACGATGAACTGA
CTGGTTTTTGTTTGCTCGTTTCTAAGTTGTTAGTGACACATAAGTTAAGTTTGCAGTTCATTCGCCAGTGTGTATTGTAA
CTTTGCAATAAGGCACCTGCTTGATAGCTTTCTTTTCATATTGTTCTTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2224.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis