Browse Element(s) Details


Os.47755.1.S1_at

Description gb:AK111823.1
DB_XREF= gi:37988486
TID=Os.47755.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47755 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023048C13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023048C13, full insert sequence.
FL= gb:AK111823.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1063011/11leucine-rich repeat transmembrane protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10590Os.50123.1.S1_x_at11/117+5745694..5748126Sugar transporter family protein, expressed
LOC_Os07g10600Os.2224.1.S1_a_at11/117+5749185..5755006Cycloartenol-C-24-methyltransferase 1, putative, expressed
LOC_Os07g10610NANA7+5765881..5766816expressed protein
LOC_Os07g10620Os.55266.1.S1_at11/117+5767849..5769747expressed protein
LOC_Os07g10620OsAffx.5285.1.S1_at11/117+5767849..5769747expressed protein
LOC_Os07g10620OsAffx.5285.1.S1_x_at11/117+5767849..5769747expressed protein
LOC_Os07g10630Os.47755.1.S1_at11/117+5772256..5775785leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g10630Os.27728.1.S1_at1/117+5772256..5775785leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g10640OsAffx.28389.1.S1_at11/117+5778285..5779098expressed protein
LOC_Os07g10650OsAffx.5286.1.S1_at11/117+5784632..5784928hypothetical protein
LOC_Os07g10660Os.16825.1.S1_at11/117+5785515..578752340S ribosomal protein S2, putative, expressed
LOC_Os07g10660OsAffx.5287.1.S1_s_at11/117+5785515..578752340S ribosomal protein S2, putative, expressed
LOC_Os07g10670OsAffx.16198.1.S1_at11/117+5793684..5794307hypothetical protein
LOC_Os07g10680OsAffx.28391.1.S1_x_at2/117+5799164..5800891Polygalacturonase precursor, putative
LOC_Os07g10680OsAffx.28393.1.S1_at2/117+5799164..5800891Polygalacturonase precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47755.1.S1_at--708--9731Chr07:5772832..5772856 (25 bp)
TCAAGGTCGCGATGCTGTGCACCGA
LOC_Os07g10630
Os.47755.1.S1_at--809--7591Chr07:5772730..5772754 (25 bp)
GGGCAGGGACAGCATATCCTCTAGC
LOC_Os07g10630
Os.47755.1.S1_at--764--5291Chr07:5772682..5772706 (25 bp)
GAAGCGTAAACAACAACCCCGTGCG
LOC_Os07g10630
Os.47755.1.S1_at--522--7911Chr07:5772640..5772664 (25 bp)
GGTTGACCGATCGATCCTGGTATAT
LOC_Os07g10630
Os.47755.1.S1_at--1117--331Chr07:5772617..5772641 (25 bp)
ATAAATCCAACGATGCCGTCTTCTT
LOC_Os07g10630
Os.47755.1.S1_at--823--3211Chr07:5772551..5772575 (25 bp)
CAAGTCCCAGCCAAACAGTATGTAT
LOC_Os07g10630
Os.47755.1.S1_at--613--2131Chr07:5772513..5772537 (25 bp)
ACAGTGGCTGCTGTACTGCTAGCAA
LOC_Os07g10630
Os.47755.1.S1_at--479--7331Chr07:5772374..5772398 (25 bp)
GTGCTTGTGCACCTATGACCTATTC
LOC_Os07g10630
Os.47755.1.S1_at--576--691Chr07:5772360..5772384 (25 bp)
ATGACCTATTCTCTTTTCTCTCTAT
LOC_Os07g10630
Os.47755.1.S1_at--638--10031Chr07:5772319..5772343 (25 bp)
TAGAGTGGTCTCCTCTTCTGTAAAG
LOC_Os07g10630
Os.47755.1.S1_at--886--6811Chr07:5772295..5772319 (25 bp)
GTTTTTTCTTCACTATCAATGCCTG
LOC_Os07g10630
Target Sequence 
TCAAGGTCGCGATGCTGTGCACCGAGCGCGCCCCAGCGAAGCGGCCCAAGATGAAGAAGGTGGTGGAAATGCTGCAAGAG
GCCAAGAACAGCTGAGGACCCAGGGCAGGGACAGCATATCCTCTAGCTGNGAAGATTGCTCATGAAACGAGAAGCGTAAA
CAACAACCCCGTGCGGTAANTTTTTGGCGATCGGTTGACCGATCGATCCTGGTATATAAATCCAACGATGCCGTCTTCTT
CGGTGTACATAACCTTCATTAGGGGGGGGGGGGGGTATCCCAAGTCCCAGCCAAACAGTATGTATCATAGATTTGAGCAC
AGTGGCTGCTGTACTGCTAGCAACATGCAGAGTGGAGAATGTNTGGTACATTACAAATCTGGTCGGAAACCTTGAAAAAT
TCAGGCATCCTGTTGCTCCCATTACATGCTGAGCTTTTGGTTGAGGTGGTTGTGCTTGTGCTTGTGCACCTATGACCTAT
TCTCTTTTCTCTCTATCATTCCACAGATAGTGTAGAGTGGTCTCCTCTTCTGTAAAGTTTTTTCTTCACTATCAATGCCT
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47755.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis