Browse Element(s) Details


Os.50123.1.S1_x_at

Description gb:AK119911.1
DB_XREF= gi:37989534
TID=Os.50123.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50123 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-C06, full insert sequence.
FL= gb:AK119911.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1059011/11Sugar transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10560Os.24000.1.S1_at11/117+5722282..5724815hypothetical protein
LOC_Os07g10560OsAffx.28388.1.S1_at11/117+5722282..5724815hypothetical protein
LOC_Os07g10570Os.11099.2.S1_x_at11/117+5735180..573596213 kDa prolamin precursor, putative, expressed
LOC_Os07g10570Os.11099.1.S1_x_at11/117+5735180..573596213 kDa prolamin precursor, putative, expressed
LOC_Os07g10570Os.8502.5.S1_x_at1/117+5735180..573596213 kDa prolamin precursor, putative, expressed
LOC_Os07g10570Os.26611.1.S1_at1/117+5735180..573596213 kDa prolamin precursor, putative, expressed
LOC_Os07g10580Os.8177.1.S1_a_at11/117+5740151..574081813 kDa prolamin precursor, putative, expressed
LOC_Os07g10580Os.16367.1.S1_at1/117+5740151..574081813 kDa prolamin precursor, putative, expressed
LOC_Os07g10580Os.11099.1.S1_x_at1/117+5740151..574081813 kDa prolamin precursor, putative, expressed
LOC_Os07g10590Os.50123.1.S1_x_at11/117+5745694..5748126Sugar transporter family protein, expressed
LOC_Os07g10600Os.2224.1.S1_a_at11/117+5749185..5755006Cycloartenol-C-24-methyltransferase 1, putative, expressed
LOC_Os07g10610NANA7+5765881..5766816expressed protein
LOC_Os07g10620Os.55266.1.S1_at11/117+5767849..5769747expressed protein
LOC_Os07g10620OsAffx.5285.1.S1_at11/117+5767849..5769747expressed protein
LOC_Os07g10620OsAffx.5285.1.S1_x_at11/117+5767849..5769747expressed protein
LOC_Os07g10630Os.47755.1.S1_at11/117+5772256..5775785leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g10630Os.27728.1.S1_at1/117+5772256..5775785leucine-rich repeat transmembrane protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50123.1.S1_x_at--938--2151Chr07:5746245..5746269 (25 bp)
ACACGTGAAGGCGAACGGCAATCCG
LOC_Os07g10590
Os.50123.1.S1_x_at--768--8471Chr07:5746204..5746228 (25 bp)
TGGCGATCGTGGTGCTCATCTGCGT
LOC_Os07g10590
Os.50123.1.S1_x_at--777--9931Chr07:5746178..5746202 (25 bp)
TACGTCTCGAGCTTCGCGTGGTCGT
LOC_Os07g10590
Os.50123.1.S1_x_at--981--3631Chr07:5746038..5746062 (25 bp)
CTTCCTCTCCATGATGTGCAGTATG
LOC_Os07g10590
Os.50123.1.S1_x_at--542--1191Chr07:5746019..5746043 (25 bp)
AGTATGAAGGCCTTCATCTTCTTCT
LOC_Os07g10590
Os.50123.1.S1_x_at--44--9571Chr07:5745997..5746021 (25 bp)
TCTTCTTCGCTATCTGGATCGTTAT
LOC_Os07g10590
Os.50123.1.S1_x_at--797--6391Chr07:5745981..5746005 (25 bp)
GATCGTTATCATGGCCGCCTTCGTC
LOC_Os07g10590
Os.50123.1.S1_x_at--697--9571Chr07:5745958..5745982 (25 bp)
TCTTCTGGCTGCTGCCGGAGACGAA
LOC_Os07g10590
Os.50123.1.S1_x_at--547--8471Chr07:5745899..5745923 (25 bp)
TGGCGCCGCCATTGGTTCTGGAAGA
LOC_Os07g10590
Os.50123.1.S1_x_at--909--8191Chr07:5745880..5745904 (25 bp)
GGAAGAGGTTCTTCACCGATGCCGG
LOC_Os07g10590
Os.50123.1.S1_x_at--897--5471Chr07:5745696..5745720 (25 bp)
GAACTACGTACTCTCAAATTCACAT
LOC_Os07g10590
Target Sequence 
ACACGTGAAGGCGAACGGCAATCCGGGCGAGAAGTGGGCGGTGGCGATCGTGGTGCTCATCTGCGTCTACGTCTCGAGCT
TCGCGTGGTCGTGGGGGCCCCTGGGGTGGCTAATCNCGTCGGAGACATTCCCCCTGGCGACGAGGACGACGGGGTTCTCC
TTCGCCGTGAGCTCCAACATGCTCTTCACCTTCCTCATCGCGCAGGCCTTCCTCTCCATGATGTGCAGTATGAAGGCCTT
CATCTTCTTCTTCTTCGCTATCTGGATCGTTATCATGGCCGCCTTCGTCTTCTGGCTGCTGCCGGAGACGAAGGGGGTGC
CCATCGACGAGATGGTCGACACGGTGTGGCGCCGCCATTGGTTCTGGAAGAGGTTCTTCACCGATGCCGGGGATGGCAGG
ATTGGTAACTGCTGATGGATGGGTTTGAAATTTGATTTGATTTGAAGATCCATTGATGAAATCAAGTCAAATTGAAATTA
GTTTTACCTATTATTTATGAGTAATCGGAATGTAGTAATTTATTTGGGTGTGGATGATTATGATGAGATGAACTACGTAC
TCTCAAATTCACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50123.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis