Browse Element(s) Details


Os.27728.1.S1_at

Description gb:CB675503
DB_XREF= gi:29679228
DB_XREF=OSJNEe11E14.r
CLONE=OSJNEe11E14
TID=Os.27728.1
CNT=13
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.27728 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_181241.1 (A.thaliana) phenylalanine ammonia lyase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3361011/11Phenylalanine ammonia-lyase, putative, expressed
LOC_Os11g481102/11Phenylalanine ammonia-lyase, putative
LOC_Os07g106301/11leucine-rich repeat transmembrane protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33560OsAffx.8244.1.S1_at1/1112+20240901..20243492retrotransposon protein, putative, unclassified
LOC_Os12g33570OsAffx.7778.1.S1_at11/1112+20246504..20247236hypothetical protein
LOC_Os12g33580NANA12+20254499..20256146retrotransposon protein, putative, unclassified
LOC_Os12g33590OsAffx.32003.1.S1_at11/1112+20259328..20262399hypothetical protein
LOC_Os12g33600OsAffx.19947.1.S1_x_at11/1112+20262829..20263218hypothetical protein
LOC_Os12g33610Os.27728.1.S1_at11/1112+20264406..20266849Phenylalanine ammonia-lyase, putative, expressed
LOC_Os12g33620OsAffx.8455.1.S1_at1/1112+20267779..20268728transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g33630OsAffx.7779.1.S1_at11/1112+20272500..20273204hypothetical protein
LOC_Os12g33640NANA12+20275110..20277949hAT family dimerisation domain containing protein
LOC_Os12g33650Os.51348.1.S1_x_at1/1112+20282322..20284525retrotransposon protein, putative, unclassified
LOC_Os12g33660NANA12+20290208..20292898retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0006979biological_processresponse to oxidative stress
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009611biological_processresponse to wounding
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0045548molecular_functionphenylalanine ammonia-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27728.1.S1_at--908--8531Chr12:20266273..20266297 (25 bp)
TGGACCATGCGCTGGCCAACGGTGA
LOC_Os12g33610
Os.27728.1.S1_at--847--2572Chr12:20266290..20266314 (25 bp)
AACGGTGACAACCAGCTGGCCAAGG
LOC_Os12g33610
Os.27728.1.S1_at--496--3872Chr12:20266431..20266455 (25 bp)
CTGTACAGGTTCGTGCGCAAGGAGC
LOC_Os12g33610
Os.27728.1.S1_at--904--1491Chr12:20266540..20266564 (25 bp)
AGCACATCAACCCACTGCTGGAGTG
LOC_Os12g33610
Os.27728.1.S1_at--221--9672Chr12:20266567..20266591 (25 bp)
TCAGCGAGTGGAAAGGCGCGCCCCT
LOC_Os12g33610
Os.27728.1.S1_at--1044--4271Chr12:20266589..20266613 (25 bp)
CCTGCCACTTAATTAGCTCAACTAC
LOC_Os12g33610
Os.27728.1.S1_at--802--1871Chr12:20266634..20266658 (25 bp)
ACGAGGTGTACGTCTGACGGATGAA
LOC_Os12g33610
Os.27728.1.S1_at--781--7011Chr12:20266677..20266701 (25 bp)
GTACTATCCTACTATATATACCCAA
LOC_Os12g33610
Os.27728.1.S1_at--842--171Chr12:20266692..20266716 (25 bp)
ATATACCCAATAATTCACGCGGCGG
LOC_Os12g33610
Os.27728.1.S1_at--723--6851Chr12:20266760..20266784 (25 bp)
GTTTGACCACTTATTATAATCATGG
LOC_Os12g33610
Os.27728.1.S1_at--184--372Chr12:20266775..20266799 (25 bp)
ATAATCATGGTGTACTTGTGTCTTA
LOC_Os12g33610
Target Sequence 
TGGACCATGCGCTGGCCAACGGTGACAACCAGCTGGCCAAGGTGGNTGAGTTCGAGCAGCAGCTCCGCGCGGTGCTCCAC
GACGAGGTGGAGGCCGCACGCGCGGCTGTGGAGAGCGGCACGGCCCCGAACAGGATCACCCAGTGTCGCTCGTACCCGCT
GTACAGGTTCGTGCGCAAGGAGCTCGGCGCCGAGTACCTGACCGGCGAGAAGACGCGGTCGCCCGGGGAGGAGGTGGACA
AGGTGGTGATCGCCATGAACCAGCACAAGCACATCAACCCACTGCTGGAGTGCCTCAGCGAGTGGAAAGGCGCGCCCCTG
CCACTTAATTAGCTCAACTACGTACGTACAAATAAGAGAAGACGAGGTGTACGTCTGACGGATGAAAAATTATTTAAAGC
AAAAGTACTATCCTACTATATATACCCAATAATTCACGCGGCGGGCCGGGGCGTAAGTGAATAAAGAATAATGGACTATA
TATAAATGTTTGACCACTTATTATAATCATGGTGTACTTGTGTCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27728.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis