Browse Element(s) Details


OsAffx.7778.1.S1_at

Description tigr:9640.m03241
TID=OsAffx.7778.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3357011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33520OsAffx.11284.2.S1_s_at2/1112+20222557..20223826Transposable element protein, putative, Retrotrans_gag
LOC_Os12g33520OsAffx.11284.2.S1_at1/1112+20222557..20223826Transposable element protein, putative, Retrotrans_gag
LOC_Os12g33530Os.47114.1.S1_x_at1/1112+20227654..20234820retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33530Os.31535.1.A1_at1/1112+20227654..20234820retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33530OsAffx.576.1.A1_at1/1112+20227654..20234820retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33540NANA12+20236250..20236654retrotransposon protein, putative, unclassified
LOC_Os12g33550NANA12+20237431..20238175retrotransposon protein, putative, unclassified
LOC_Os12g33560OsAffx.8244.1.S1_at1/1112+20240901..20243492retrotransposon protein, putative, unclassified
LOC_Os12g33570OsAffx.7778.1.S1_at11/1112+20246504..20247236hypothetical protein
LOC_Os12g33580NANA12+20254499..20256146retrotransposon protein, putative, unclassified
LOC_Os12g33590OsAffx.32003.1.S1_at11/1112+20259328..20262399hypothetical protein
LOC_Os12g33600OsAffx.19947.1.S1_x_at11/1112+20262829..20263218hypothetical protein
LOC_Os12g33610Os.27728.1.S1_at11/1112+20264406..20266849Phenylalanine ammonia-lyase, putative, expressed
LOC_Os12g33620OsAffx.8455.1.S1_at1/1112+20267779..20268728transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7778.1.S1_at--264--9371Chr12:20247122..20247146 (25 bp)
TCGACTTCGAGGACATTTCAGAGTT
LOC_Os12g33570
OsAffx.7778.1.S1_at--37--8131Chr12:20247112..20247136 (25 bp)
GGACATTTCAGAGTTCAGGACCAGT
LOC_Os12g33570
OsAffx.7778.1.S1_at--992--9471Chr12:20247088..20247112 (25 bp)
TCTGCACTAAAACGGAGGCCCATGT
LOC_Os12g33570
OsAffx.7778.1.S1_at--253--2431Chr12:20247080..20247104 (25 bp)
AAAACGGAGGCCCATGTCGCATACA
LOC_Os12g33570
OsAffx.7778.1.S1_at--945--8391Chr12:20247072..20247096 (25 bp)
GGCCCATGTCGCATACATGCATGGA
LOC_Os12g33570
OsAffx.7778.1.S1_at--320--3531Chr12:20247057..20247081 (25 bp)
CATGCATGGATTAGGACATTCTTTA
LOC_Os12g33570
OsAffx.7778.1.S1_at--436--6151Chr12:20246638..20246662 (25 bp)
GAGGTCAACCATGCTTCGACACGGT
LOC_Os12g33570
OsAffx.7778.1.S1_at--748--4011Chr12:20246562..20246586 (25 bp)
CGTTCAGAAGCCAAATCGATTTGTA
LOC_Os12g33570
OsAffx.7778.1.S1_at--203--3051Chr12:20246549..20246573 (25 bp)
AATCGATTTGTATCGCAACTCCACC
LOC_Os12g33570
OsAffx.7778.1.S1_at--742--10791Chr12:20246542..20246566 (25 bp)
TTGTATCGCAACTCCACCCAATTGT
LOC_Os12g33570
OsAffx.7778.1.S1_at--1153--3251Chr12:20246534..20246558 (25 bp)
CAACTCCACCCAATTGTCTGTCTAT
LOC_Os12g33570
Target Sequence
TCGACTTCGAGGACATTTCAGAGTTCAGGACCAGTCTGCACTAAAACGGAGGCCCATGTCGCATACATGCATGGATTAGG
ACATTCTTTATATGGATGGAAAGGGATTAGCCTTCTCGGCGAGGTCAACCATGCTTCGACACGGTTGATAACCAGAGGAG
ACGTGGTGCTGCGATTGCGGGGCTCAAGAGCGTGTTCGTTCAGAAGCCAAATCGATTTGTATCGCAACTCCACCCAATTG
TCTGTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7778.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis