Browse Element(s) Details


OsAffx.19947.1.S1_x_at

Description tigr:9640.m03244
TID=OsAffx.19947.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3360011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33550NANA12+20237431..20238175retrotransposon protein, putative, unclassified
LOC_Os12g33560OsAffx.8244.1.S1_at1/1112+20240901..20243492retrotransposon protein, putative, unclassified
LOC_Os12g33570OsAffx.7778.1.S1_at11/1112+20246504..20247236hypothetical protein
LOC_Os12g33580NANA12+20254499..20256146retrotransposon protein, putative, unclassified
LOC_Os12g33590OsAffx.32003.1.S1_at11/1112+20259328..20262399hypothetical protein
LOC_Os12g33600OsAffx.19947.1.S1_x_at11/1112+20262829..20263218hypothetical protein
LOC_Os12g33610Os.27728.1.S1_at11/1112+20264406..20266849Phenylalanine ammonia-lyase, putative, expressed
LOC_Os12g33620OsAffx.8455.1.S1_at1/1112+20267779..20268728transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g33630OsAffx.7779.1.S1_at11/1112+20272500..20273204hypothetical protein
LOC_Os12g33640NANA12+20275110..20277949hAT family dimerisation domain containing protein
LOC_Os12g33650Os.51348.1.S1_x_at1/1112+20282322..20284525retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19947.1.S1_x_at--116--311Chr12:20262868..20262892 (25 bp)
ATACTGCTCGGCAAAGCCGGCAAGG
LOC_Os12g33600
OsAffx.19947.1.S1_x_at--1094--4251Chr12:20262884..20262908 (25 bp)
CCGGCAAGGCATGGCTCGCGGACTA
LOC_Os12g33600
OsAffx.19947.1.S1_x_at--647--8471Chr12:20262914..20262938 (25 bp)
TGGCGCGGGTGGTCTCGTCCCTAGC
LOC_Os12g33600
OsAffx.19947.1.S1_x_at--130--8611Chr12:20263037..20263061 (25 bp)
TGGTGCTCTCGTGCCCGGGCAGCGA
LOC_Os12g33600
OsAffx.19947.1.S1_x_at--1098--1711Chr12:20263090..20263114 (25 bp)
ACCAGCTGCGGCCACGGTTGCGTCA
LOC_Os12g33600
OsAffx.19947.1.S1_x_at--726--3391Chr12:20263092..20263116 (25 bp)
CAGCTGCGGCCACGGTTGCGTCATC
LOC_Os12g33600
OsAffx.19947.1.S1_x_at--962--3951Chr12:20263104..20263128 (25 bp)
CGGTTGCGTCATCCCCCTTGGCGAA
LOC_Os12g33600
OsAffx.19947.1.S1_x_at--253--3611Chr12:20263120..20263144 (25 bp)
CTTGGCGAAACCAGCGGGCACAGCA
LOC_Os12g33600
OsAffx.19947.1.S1_x_at--323--2371Chr12:20263127..20263151 (25 bp)
AAACCAGCGGGCACAGCAACAGCAG
LOC_Os12g33600
OsAffx.19947.1.S1_x_at--478--2491Chr12:20263144..20263168 (25 bp)
AACAGCAGCGAGGAAAAGATGAGCC
LOC_Os12g33600
OsAffx.19947.1.S1_x_at--767--691Chr12:20263162..20263186 (25 bp)
ATGAGCCGGGCAGCTGTGGTAGCAA
LOC_Os12g33600
Target Sequence 
ATACTGCTCGGCAAAGCCGGCAAGGCATGGCTCGCGGACTACGGCCTGGCGCGGGTGGTCTCGTCCCTAGCGGCCGCCGC
CGCGAGCTCGGCGTGGTACCGCGCCCCCGAGGCACCCCCGGTGCCACGGCCGTGGGCGTCGCAGAAGGGCGACGTGTACG
CGTTCGGCGTGGTGCTCTCGTGCCCGGGCAGCGAGCTTCCCAACGGCGACGCCGCCGTGCCCACCAGCTGCGGCCACGGT
TGCGTCATCCCCCTTGGCGAAACCAGCGGGCACAGCAACAGCAGCGAGGAAAAGATGAGCCGGGCAGCTGTGGTAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19947.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis