Browse Element(s) Details


OsAffx.32003.1.S1_at

Description tigr:9640.m03243
TID=OsAffx.32003.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3359011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33530Os.47114.1.S1_x_at1/1112+20227654..20234820retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33530Os.31535.1.A1_at1/1112+20227654..20234820retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33530OsAffx.576.1.A1_at1/1112+20227654..20234820retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33540NANA12+20236250..20236654retrotransposon protein, putative, unclassified
LOC_Os12g33550NANA12+20237431..20238175retrotransposon protein, putative, unclassified
LOC_Os12g33560OsAffx.8244.1.S1_at1/1112+20240901..20243492retrotransposon protein, putative, unclassified
LOC_Os12g33570OsAffx.7778.1.S1_at11/1112+20246504..20247236hypothetical protein
LOC_Os12g33580NANA12+20254499..20256146retrotransposon protein, putative, unclassified
LOC_Os12g33590OsAffx.32003.1.S1_at11/1112+20259328..20262399hypothetical protein
LOC_Os12g33600OsAffx.19947.1.S1_x_at11/1112+20262829..20263218hypothetical protein
LOC_Os12g33610Os.27728.1.S1_at11/1112+20264406..20266849Phenylalanine ammonia-lyase, putative, expressed
LOC_Os12g33620OsAffx.8455.1.S1_at1/1112+20267779..20268728transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g33630OsAffx.7779.1.S1_at11/1112+20272500..20273204hypothetical protein
LOC_Os12g33640NANA12+20275110..20277949hAT family dimerisation domain containing protein
LOC_Os12g33650Os.51348.1.S1_x_at1/1112+20282322..20284525retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32003.1.S1_at--235--1411Chr12:20259363..20259387 (25 bp)
AGAACTAGACGTCTATGAGGACCCA
LOC_Os12g33590
OsAffx.32003.1.S1_at--623--9271Chr12:20259390..20259414 (25 bp)
TCCTGTAAAAGATGTCGTGGGCCAA
LOC_Os12g33590
OsAffx.32003.1.S1_at--838--9411Chr12:20259404..20259428 (25 bp)
TCGTGGGCCAAACCCTGGTTGATAA
LOC_Os12g33590
OsAffx.32003.1.S1_at--752--8131Chr12:20259432..20259456 (25 bp)
GGAAATCGGGAAGTCTGAAGTGCCT
LOC_Os12g33590
OsAffx.32003.1.S1_at--606--6531Chr12:20259792..20259816 (25 bp)
GATTTCACTGATATTCACGCCATCT
LOC_Os12g33590
OsAffx.32003.1.S1_at--435--131Chr12:20259804..20259828 (25 bp)
ATTCACGCCATCTATCGTTGGGAAA
LOC_Os12g33590
OsAffx.32003.1.S1_at--1090--3391Chr12:20260020..20260044 (25 bp)
CAGCATACCGTGACGCTGTCATTAA
LOC_Os12g33590
OsAffx.32003.1.S1_at--269--5791Chr12:20260031..20260052 (22 bp)
GACGCTGTCATTAAATTCCAAGGTT
LOC_Os12g33590
OsAffx.32003.1.S1_at--633--10531Chr12:20262286..20262310 (25 bp)
TTCATCCACCGCAGGAGGTATCATA
LOC_Os12g33590
OsAffx.32003.1.S1_at--461--5771Chr12:20262317..20262341 (25 bp)
GACGATTCTTCGACCTAGACAGCAT
LOC_Os12g33590
OsAffx.32003.1.S1_at--469--5651Chr12:20262334..20262358 (25 bp)
GACAGCATACTAGCTACAAGCAATG
LOC_Os12g33590
Target Sequence 
AGAACTAGACGTCTATGAGGACCCAAATCCTGTAAAAGATGTCGTGGGCCAAACCCTGGTTGATAACAAGGAAATCGGGA
AGTCTGAAGTGCCTAGAGTGCTCAAAAGCCACAACTCCAAGTCTATGGGTGATCAAAAGGAGAAGTGGATGGTATCCACC
TTCAGAGGGGGTTTCTTCTGGCTAGATTTCACTGATATTCACGCCATCTATCGTTGGGAAAAGATGGACGTAAACTTTGT
CGGTGCATGGTGCCTGTTGCAATACATGGATGCTGAGAAGACAAAGCAATCTATCGAATATCTGGATCCAACAAGGATCT
GTCAAACACAGCATACCGTGACGCTGTCATTAAATTCCAAGGTTAATGGAAGATATAGGGTTAACCCAGAGGATTTGCCT
AGAATAGAACATCGAACAAACTTTGACGATACAAGCATTACAAATGTGCAGCGGGACCTCTACCTCTTCATCCACCGCAG
GAGGTATCATATCAAAAGACGATTCTTCGACCTAGACAGCATACTAGCTACAAGCAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32003.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis