Browse Element(s) Details


OsAffx.7779.1.S1_at

Description tigr:9640.m03247
TID=OsAffx.7779.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3363011/11hypothetical protein
LOC_Os08g120208/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g524606/11protein of unknown function, TIGR01935 containing protein, expressed
LOC_Os04g580401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33580NANA12+20254499..20256146retrotransposon protein, putative, unclassified
LOC_Os12g33590OsAffx.32003.1.S1_at11/1112+20259328..20262399hypothetical protein
LOC_Os12g33600OsAffx.19947.1.S1_x_at11/1112+20262829..20263218hypothetical protein
LOC_Os12g33610Os.27728.1.S1_at11/1112+20264406..20266849Phenylalanine ammonia-lyase, putative, expressed
LOC_Os12g33620OsAffx.8455.1.S1_at1/1112+20267779..20268728transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g33630OsAffx.7779.1.S1_at11/1112+20272500..20273204hypothetical protein
LOC_Os12g33640NANA12+20275110..20277949hAT family dimerisation domain containing protein
LOC_Os12g33650Os.51348.1.S1_x_at1/1112+20282322..20284525retrotransposon protein, putative, unclassified
LOC_Os12g33660NANA12+20290208..20292898retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7779.1.S1_at--1117--631Chr12:20272830..20272854 (25 bp)
ATGCTTGTTGCCAATAGGGATGCAA
LOC_Os12g33630
OsAffx.7779.1.S1_at--832--2232Chr12:20272907..20272931 (25 bp)
AAATTTGCGGGCTGGCCATCCCGCG
LOC_Os12g33630
OsAffx.7779.1.S1_at--217--553Chr12:20272924..20272948 (25 bp)
ATCCCGCGTGGACCTTGCAAAATTG
LOC_Os12g33630
OsAffx.7779.1.S1_at--53--4194Chr12:20272927..20272951 (25 bp)
CCGCGTGGACCTTGCAAAATTGTTT
LOC_Os12g33630
OsAffx.7779.1.S1_at--644--10678Chr12:20272938..20272962 (25 bp)
TTGCAAAATTGTTTGGCCCATCCCG
LOC_Os12g33630
OsAffx.7779.1.S1_at--402--3175Chr12:20272944..20272968 (25 bp)
AATTGTTTGGCCCATCCCGCACAGC
LOC_Os12g33630
OsAffx.7779.1.S1_at--850--4311Chr12:20272969..20272993 (25 bp)
CCATTGGGCGCCACGGCATTAGGGC
LOC_Os12g33630
OsAffx.7779.1.S1_at--367--4414Chr12:20272978..20273002 (25 bp)
GCCACGGCATTAGGGCACAGACTGG
LOC_Os12g33630
OsAffx.7779.1.S1_at--72--3595Chr12:20272985..20273009 (25 bp)
CATTAGGGCACAGACTGGGAGACGC
LOC_Os12g33630
OsAffx.7779.1.S1_at--299--9234Chr12:20273136..20273160 (25 bp)
TCCAGTCTCCTGATCCAGCGAAATA
LOC_Os12g33630
OsAffx.7779.1.S1_at--1081--573Chr12:20273148..20273172 (25 bp)
ATCCAGCGAAATAGCGAATCCAGTG
LOC_Os12g33630
Target Sequence 
ATGCTTGTTGCCAATAGGGATGCAAGTGGGGCGGGCTTTTTTTTCGGCCCACAGTCCCGCCCCACAAAAAAGCCCGCAAA
TTTGCGGGCTGGCCATCCCGCGTGGACCTTGCAAAATTGTTTGGCCCATCCCGCACAGCCCATTGGGCGCCACGGCATTA
GGGCACAGACTGGGAGACGCGAGACGCAGCCGCAGCGGCGCAGCCGAGACGGGAGACGGGAGACGGCGGCGGCGAGACGG
CGCCGCAGCGGCCGCTACTCTCGTCTTCCTCGTCGCCCATCCATCCAAATCCAGCAGCCGACGCCCTCCAGTCTCCTGAT
CCAGCGAAATAGCGAATCCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7779.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis