Browse Element(s) Details


OsAffx.28393.1.S1_at

Description tigr:9635.m01044
TID=OsAffx.28393.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Polygalacturonase (pectinase)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1074011/11Polygalacturonase precursor, putative
LOC_Os07g106802/11Polygalacturonase precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10690Os.27504.1.S1_at11/117+5803688..5809674NLI interacting factor, putative, expressed
LOC_Os07g10690Os.49888.1.S1_at10/117+5803688..5809674NLI interacting factor, putative, expressed
LOC_Os07g10690OsAffx.28390.1.S1_at10/117+5803688..5809674NLI interacting factor, putative, expressed
LOC_Os07g10690Os.32108.1.S1_s_at1/117+5803688..5809674NLI interacting factor, putative, expressed
LOC_Os07g10700OsAffx.28391.1.S1_at11/117+5810497..5812217Polygalacturonase precursor, putative
LOC_Os07g10700OsAffx.28391.1.S1_x_at11/117+5810497..5812217Polygalacturonase precursor, putative
LOC_Os07g10700Os.49983.1.S1_at1/117+5810497..5812217Polygalacturonase precursor, putative
LOC_Os07g10700OsAffx.3028.1.S1_at1/117+5810497..5812217Polygalacturonase precursor, putative
LOC_Os07g10710NANA7+5815614..5816825F-box domain containing protein
LOC_Os07g10720Os.4622.1.S1_at11/117+5818028..582007740S ribosomal protein S15a, putative, expressed
LOC_Os07g10730Os.49983.1.S1_at5/117+5821134..5822307Polygalacturonase precursor, putative
LOC_Os07g10730OsAffx.28391.1.S1_x_at3/117+5821134..5822307Polygalacturonase precursor, putative
LOC_Os07g10740OsAffx.28393.1.S1_at11/117+5826719..5828449Polygalacturonase precursor, putative
LOC_Os07g10740OsAffx.28391.1.S1_x_at2/117+5826719..5828449Polygalacturonase precursor, putative
LOC_Os07g10750Os.11575.4.S1_x_at11/117+5832985..5834887transposon protein, putative, Pong sub-class
LOC_Os07g10750Os.11575.2.S1_a_at9/117+5832985..5834887transposon protein, putative, Pong sub-class
LOC_Os07g10750Os.11575.3.S1_x_at8/117+5832985..5834887transposon protein, putative, Pong sub-class
LOC_Os07g10760OsAffx.20858.1.S1_x_at10/117+5835754..5836511hypothetical protein
LOC_Os07g10760OsAffx.20858.4.S1_x_at9/117+5835754..5836511hypothetical protein
LOC_Os07g10770Os.10176.1.S1_at11/117+5851080..5857018Cellulose synthase A catalytic subunit 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28393.1.S1_at--638--1531Chr07:5827893..5827917 (25 bp)
AGCATCGGGAGCCTAGGCGATCACA
LOC_Os07g10740
OsAffx.28393.1.S1_at--798--892Chr07:5827907..5827931 (25 bp)
AGGCGATCACAACTCTGAAGCTCAT
LOC_Os07g10740
OsAffx.28393.1.S1_at--211--8252Chr07:5827950..5827974 (25 bp)
GGCACTGTCAGGCTATATGGCACAA
LOC_Os07g10740
OsAffx.28393.1.S1_at--996--8491Chr07:5828050..5828074 (25 bp)
TGGAAAATGTTTGGAACCCCGTCAT
LOC_Os07g10740
OsAffx.28393.1.S1_at--944--5431Chr07:5828063..5828087 (25 bp)
GAACCCCGTCATTATCGATCAAAAC
LOC_Os07g10740
OsAffx.28393.1.S1_at--489--2531Chr07:5828085..5828109 (25 bp)
AACTACTGTGACTCTGCAACACCAT
LOC_Os07g10740
OsAffx.28393.1.S1_at--1022--10251Chr07:5828200..5828224 (25 bp)
TTTGTCTCAGACATCTGCAGTTCAG
LOC_Os07g10740
OsAffx.28393.1.S1_at--713--8011Chr07:5828272..5828296 (25 bp)
GGAGGCTATCAAGCTGGACTGCAGC
LOC_Os07g10740
OsAffx.28393.1.S1_at--1098--1511Chr07:5828294..5828318 (25 bp)
AGCAGAAATGTACCTTGCCAAGGCA
LOC_Os07g10740
OsAffx.28393.1.S1_at--1036--8851Chr07:5828329..5828353 (25 bp)
TGATGTCAAGCTCACTGTCAAGGGA
LOC_Os07g10740
OsAffx.28393.1.S1_at--535--7391Chr07:5828361..5828385 (25 bp)
GTGATGCGAAGAGCACTTGCCGAAA
LOC_Os07g10740
Target Sequence 
AGCATCGGGAGCCTAGGCGATCACAACTCTGAAGCTCATGTCAACAATGTCACCATCGGCACTGTCAGGCTATATGGCAC
AACCAACGGAGCTCGCATCAAGACATGGCAGGGTGGTCGGGGGTACGCGAAGTACATTGTTTTCCAGAACATGATCATGG
AAAATGTTTGGAACCCCGTCATTATCGATCAAAACTACTGTGACTCTGCAACACCATGCAAGAAACAGTTGTCCATTTGT
GTGAATAATATGGAAGCTTATAATTTAGTGTTTTTGTCTCAGACATCTGCAGTTCAGATTAGCAATGTGGTCTTCAAGAA
CATCAGGGGCACAAGTGCTTCCAAGGAGGCTATCAAGCTGGACTGCAGCAGAAATGTACCTTGCCAAGGCATAACCTTGA
ATGATGTCAAGCTCACTGTCAAGGGAGGTGGTGGTGATGCGAAGAGCACTTGCCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28393.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis