Browse Element(s) Details


Os.49888.1.S1_at

Description gb:AK119292.1
DB_XREF= gi:37988915
TID=Os.49888.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49888 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-130-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-130-D09, full insert sequence.
FL= gb:AK119292.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1069010/11NLI interacting factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10640OsAffx.28389.1.S1_at11/117+5778285..5779098expressed protein
LOC_Os07g10650OsAffx.5286.1.S1_at11/117+5784632..5784928hypothetical protein
LOC_Os07g10660Os.16825.1.S1_at11/117+5785515..578752340S ribosomal protein S2, putative, expressed
LOC_Os07g10660OsAffx.5287.1.S1_s_at11/117+5785515..578752340S ribosomal protein S2, putative, expressed
LOC_Os07g10670OsAffx.16198.1.S1_at11/117+5793684..5794307hypothetical protein
LOC_Os07g10680OsAffx.28391.1.S1_x_at2/117+5799164..5800891Polygalacturonase precursor, putative
LOC_Os07g10680OsAffx.28393.1.S1_at2/117+5799164..5800891Polygalacturonase precursor, putative
LOC_Os07g10690Os.27504.1.S1_at11/117+5803688..5809674NLI interacting factor, putative, expressed
LOC_Os07g10690Os.49888.1.S1_at10/117+5803688..5809674NLI interacting factor, putative, expressed
LOC_Os07g10690OsAffx.28390.1.S1_at10/117+5803688..5809674NLI interacting factor, putative, expressed
LOC_Os07g10690Os.32108.1.S1_s_at1/117+5803688..5809674NLI interacting factor, putative, expressed
LOC_Os07g10700OsAffx.28391.1.S1_at11/117+5810497..5812217Polygalacturonase precursor, putative
LOC_Os07g10700OsAffx.28391.1.S1_x_at11/117+5810497..5812217Polygalacturonase precursor, putative
LOC_Os07g10700Os.49983.1.S1_at1/117+5810497..5812217Polygalacturonase precursor, putative
LOC_Os07g10700OsAffx.3028.1.S1_at1/117+5810497..5812217Polygalacturonase precursor, putative
LOC_Os07g10710NANA7+5815614..5816825F-box domain containing protein
LOC_Os07g10720Os.4622.1.S1_at11/117+5818028..582007740S ribosomal protein S15a, putative, expressed
LOC_Os07g10730Os.49983.1.S1_at5/117+5821134..5822307Polygalacturonase precursor, putative
LOC_Os07g10730OsAffx.28391.1.S1_x_at3/117+5821134..5822307Polygalacturonase precursor, putative
LOC_Os07g10740OsAffx.28393.1.S1_at11/117+5826719..5828449Polygalacturonase precursor, putative
LOC_Os07g10740OsAffx.28391.1.S1_x_at2/117+5826719..5828449Polygalacturonase precursor, putative
LOC_Os07g10750Os.11575.4.S1_x_at11/117+5832985..5834887transposon protein, putative, Pong sub-class
LOC_Os07g10750Os.11575.2.S1_a_at9/117+5832985..5834887transposon protein, putative, Pong sub-class
LOC_Os07g10750Os.11575.3.S1_x_at8/117+5832985..5834887transposon protein, putative, Pong sub-class

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Gene Ontology Classification
GO idTypeName
GO:0000775cellular_componentchromosome, pericentric region
GO:0005634cellular_componentnucleus
GO:0005694cellular_componentchromosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49888.1.S1_at--187--10491Chr07:5806029..5806053 (25 bp)
TTAACTACTTAATGCCTGTTCCGGC
LOC_Os07g10690
Os.49888.1.S1_at--970--4471Chr07:5806042..5806066 (25 bp)
GCCTGTTCCGGCACATGATTATTAC
LOC_Os07g10690
Os.49888.1.S1_at--58--6831Chr07:5806147..5806171 (25 bp)
GTTTAGCCTTTTTGTAACACCTGAT
LOC_Os07g10690
Os.49888.1.S1_at--86--2171Chr07:5806163..5806187 (25 bp)
ACACCTGATAATCGTGCATTGGCAT
LOC_Os07g10690
Os.49888.1.S1_at--741--8491Chr07:5806182..5806206 (25 bp)
TGGCATGTACGGTGTTGCTTCACTA
LOC_Os07g10690
Os.49888.1.S1_at--462--72Chr07:5806265..5806289 (25 bp)
ATTGCTATGCGTACGTAACTACTTA
LOC_Os07g10690
Os.49888.1.S1_at--721--631Chr07:5806289..5806313 (25 bp)
ATGCATTTATTTTTACTACTTGGGC
LOC_Os07g10690
Os.49888.1.S1_at--672--3731Chr07:5806304..5806328 (25 bp)
CTACTTGGGCAGCAGTCAGATGACA
LOC_Os07g10690
Os.49888.1.S1_at--428--6091NONE
GAGTAACTCCGCCAAAGGTATATAT
NONE
Os.49888.1.S1_at--759--5211Chr07:5806435..5806459 (25 bp)
GAATTCATCTTTTGATGCCGTCATT
LOC_Os07g10690
Os.49888.1.S1_at--162--8131Chr07:5806470..5806494 (25 bp)
GGACTAGGACGCTTTAAACATCTGT
LOC_Os07g10690
Target Sequence 
TTAACTACTTAATGCCTGTTCCGGCACATGATTATTACACTTTTATTATTGAGCTACCAAATTAACATCTGAAAAATATT
GTACTCTTTTGGTTTGGTTGTTTTAGATCATCTATAATGTTTAGCCTTTTTGTAACACCTGATAATCGTGCATTGGCATG
TACGGTGTTGCTTCACTACAAAGTTTTCACAACAAAATTTGGAACTTATTTTTCCTTTATTATTTATATTGGTATAATTG
CTATGCGTACGTAACTACTTATGCATTTATTTTTACTACTTGGGCAGCAGTCAGATGACAATGTTGATGGGAGGCCATGC
AATTCCATATTTTCCCCTGCATATCACCTTCAGAAAGAATGTGGTGCGAGTAACTCCGCCAAAGGTATATATAATTGCCA
TATTTTGAATTCATCTTTTGATGCCGTCATTGTTAAGTTTTGGACTAGGACGCTTTAAACATCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49888.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis