Browse Element(s) Details


Os.4622.1.S1_at

Description gb:AK062943.1
DB_XREF= gi:32972961
TID=Os.4622.1
CNT=30
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.4622 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-B12, full insert sequence.
FL= gb:AK062943.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1072011/1140S ribosomal protein S15a, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10670OsAffx.16198.1.S1_at11/117+5793684..5794307hypothetical protein
LOC_Os07g10680OsAffx.28391.1.S1_x_at2/117+5799164..5800891Polygalacturonase precursor, putative
LOC_Os07g10680OsAffx.28393.1.S1_at2/117+5799164..5800891Polygalacturonase precursor, putative
LOC_Os07g10690Os.27504.1.S1_at11/117+5803688..5809674NLI interacting factor, putative, expressed
LOC_Os07g10690Os.49888.1.S1_at10/117+5803688..5809674NLI interacting factor, putative, expressed
LOC_Os07g10690OsAffx.28390.1.S1_at10/117+5803688..5809674NLI interacting factor, putative, expressed
LOC_Os07g10690Os.32108.1.S1_s_at1/117+5803688..5809674NLI interacting factor, putative, expressed
LOC_Os07g10700OsAffx.28391.1.S1_at11/117+5810497..5812217Polygalacturonase precursor, putative
LOC_Os07g10700OsAffx.28391.1.S1_x_at11/117+5810497..5812217Polygalacturonase precursor, putative
LOC_Os07g10700Os.49983.1.S1_at1/117+5810497..5812217Polygalacturonase precursor, putative
LOC_Os07g10700OsAffx.3028.1.S1_at1/117+5810497..5812217Polygalacturonase precursor, putative
LOC_Os07g10710NANA7+5815614..5816825F-box domain containing protein
LOC_Os07g10720Os.4622.1.S1_at11/117+5818028..582007740S ribosomal protein S15a, putative, expressed
LOC_Os07g10730Os.49983.1.S1_at5/117+5821134..5822307Polygalacturonase precursor, putative
LOC_Os07g10730OsAffx.28391.1.S1_x_at3/117+5821134..5822307Polygalacturonase precursor, putative
LOC_Os07g10740OsAffx.28393.1.S1_at11/117+5826719..5828449Polygalacturonase precursor, putative
LOC_Os07g10740OsAffx.28391.1.S1_x_at2/117+5826719..5828449Polygalacturonase precursor, putative
LOC_Os07g10750Os.11575.4.S1_x_at11/117+5832985..5834887transposon protein, putative, Pong sub-class
LOC_Os07g10750Os.11575.2.S1_a_at9/117+5832985..5834887transposon protein, putative, Pong sub-class
LOC_Os07g10750Os.11575.3.S1_x_at8/117+5832985..5834887transposon protein, putative, Pong sub-class
LOC_Os07g10760OsAffx.20858.1.S1_x_at10/117+5835754..5836511hypothetical protein
LOC_Os07g10760OsAffx.20858.4.S1_x_at9/117+5835754..5836511hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005830cellular_componentcytosolic ribosome (sensu Eukaryota)
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4622.1.S1_at--1065--5391Chr07:5818894..5818918 (25 bp)
GAAGCGTGGTAAGCGCCAAGTTCTT
LOC_Os07g10720
Os.4622.1.S1_at--749--7051Chr07:5818886..5818910 (25 bp)
GTAAGCGCCAAGTTCTTATCCGGCC
LOC_Os07g10720
Os.4622.1.S1_at--688--10411Chr07:5818871..5818895 (25 bp)
TTATCCGGCCCTCGTCAAAGGTGAT
LOC_Os07g10720
Os.4622.1.S1_at--688--3411Chr07:5818703..5818848 (25 bp)
CAGAAGCATGGTTACATTGGTGAGT
LOC_Os07g10720
Os.4622.1.S1_at--386--8931Chr07:5818665..5818689 (25 bp)
TGACCACCGGTCTGGCAAGATCGTG
LOC_Os07g10720
Os.4622.1.S1_at--1145--7851Chr07:5818641..5818665 (25 bp)
GGTTGAGCTGAATGGACGCCTTAAC
LOC_Os07g10720
Os.4622.1.S1_at--963--6091Chr07:5818568..5818592 (25 bp)
GAGTCCTGGACTGCTAGGCTGCTTC
LOC_Os07g10720
Os.4622.1.S1_at--694--3771Chr07:5818367..5818391 (25 bp)
CTCTGCCGGAATCATGGACCACGAA
LOC_Os07g10720
Os.4622.1.S1_at--232--2891Chr07:5818315..5818339 (25 bp)
AAGGTGCTCGGCTTTTTCTACTAGA
LOC_Os07g10720
Os.4622.1.S1_at--1016--6511Chr07:5818290..5818314 (25 bp)
GATATTCATCTCACATGGAAGATTT
LOC_Os07g10720
Os.4622.1.S1_at--951--8191Chr07:5818274..5818298 (25 bp)
GGAAGATTTTCTCAGGTGTTAGCAA
LOC_Os07g10720
Target Sequence 
GAAGCGTGGTAAGCGCCAAGTTCTTATCCGGCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATG
GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCGTGGTTGAGCTGAATGGACGCCTTAACAAG
TGTGGTGTCATCAGCCCACGCTTTGATGTTGGTGTCAAGGAAATCGAGTCCTGGACTGCTAGGCTGCTTCCCTCCCGTCA
GTTTGGGTACATTGTCCTTACCACCTCTGCCGGAATCATGGACCACGAAGAAGCGAGGCGGAAGAACGTCGGAGGCAAGG
TGCTCGGCTTTTTCTACTAGAGATATTCATCTCACATGGAAGATTTTCTCAGGTGTTAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4622.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis