Browse Element(s) Details


Os.10176.1.S1_at

Description gb:AK072356.1
DB_XREF= gi:32982379
TID=Os.10176.1
CNT=30
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.10176 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023059I02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023059I02, full insert sequence.
FL= gb:AK062007.1 gb:AK072356.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1077011/11Cellulose synthase A catalytic subunit 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10740OsAffx.28393.1.S1_at11/117+5826719..5828449Polygalacturonase precursor, putative
LOC_Os07g10740OsAffx.28391.1.S1_x_at2/117+5826719..5828449Polygalacturonase precursor, putative
LOC_Os07g10750Os.11575.4.S1_x_at11/117+5832985..5834887transposon protein, putative, Pong sub-class
LOC_Os07g10750Os.11575.2.S1_a_at9/117+5832985..5834887transposon protein, putative, Pong sub-class
LOC_Os07g10750Os.11575.3.S1_x_at8/117+5832985..5834887transposon protein, putative, Pong sub-class
LOC_Os07g10760OsAffx.20858.1.S1_x_at10/117+5835754..5836511hypothetical protein
LOC_Os07g10760OsAffx.20858.4.S1_x_at9/117+5835754..5836511hypothetical protein
LOC_Os07g10770Os.10176.1.S1_at11/117+5851080..5857018Cellulose synthase A catalytic subunit 3, putative, expressed
LOC_Os07g10780Os.52422.1.S1_s_at11/117+5863037..5864374Remorin, C-terminal region family protein, expressed
LOC_Os07g10790OsAffx.28394.1.S1_at11/117+5871641..5872185hypothetical protein
LOC_Os07g10800NANA7+5873626..5874132hypothetical protein
LOC_Os07g10810Os.17465.2.A1_at4/117+5875090..5878100hypothetical protein
LOC_Os07g10810OsAffx.29276.1.S1_at1/117+5875090..5878100hypothetical protein
LOC_Os07g10820Os.47857.1.S1_at11/117+5878489..5882657transporter, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0009833biological_processprimary cell wall biosynthesis (sensu Magnoliophyta)
GO:0030244biological_processcellulose biosynthesis
GO:0005886cellular_componentplasma membrane
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10176.1.S1_at--194--5791Chr07:5851628..5851652 (25 bp)
GACGACCATCTTGATCATTAACCTG
LOC_Os07g10770
Os.10176.1.S1_at--371--8591Chr07:5851589..5851613 (25 bp)
TGGTATCTCATACGCGATCAACAGC
LOC_Os07g10770
Os.10176.1.S1_at--126--3751Chr07:5851489..5851513 (25 bp)
CTCAAGGGTCTTATGGGTCGGCAAA
LOC_Os07g10770
Os.10176.1.S1_at--953--10431Chr07:5851479..5851503 (25 bp)
TTATGGGTCGGCAAAACCGCACTCC
LOC_Os07g10770
Os.10176.1.S1_at--1083--3531Chr07:5851451..5851475 (25 bp)
CATCGTTGTTGTTTGGGCAATCCTT
LOC_Os07g10770
Os.10176.1.S1_at--593--7611Chr07:5851437..5851461 (25 bp)
GGGCAATCCTTCTGGCTTCGATCTT
LOC_Os07g10770
Os.10176.1.S1_at--1032--8391Chr07:5851366..5851390 (25 bp)
GGCCCAGATACCCAAACATGTGGCA
LOC_Os07g10770
Os.10176.1.S1_at--736--2491Chr07:5851352..5851376 (25 bp)
AACATGTGGCATCAACTGCTAAGAA
LOC_Os07g10770
Os.10176.1.S1_at--130--7731Chr07:5851235..5851259 (25 bp)
GGTGGCTTTATTTACAGCTACGTAC
LOC_Os07g10770
Os.10176.1.S1_at--563--2071Chr07:5851180..5851204 (25 bp)
ACTTGTGTCGATATGTATTCTTTTG
LOC_Os07g10770
Os.10176.1.S1_at--677--5631Chr07:5851120..5851144 (25 bp)
GACACTGTCAACGAGTTTTGTATCT
LOC_Os07g10770
Target Sequence 
GACGACCATCTTGATCATTAACCTGGTCGGTGTTGTTGCTGGTATCTCATACGCGATCAACAGCGGCTACCAATCATGGG
GACCGCTCTTTGGCAAGCTCTTCTTTGCCTTCTGGGTGATTGTCCACTTGTACCCCTTCCTCAAGGGTCTTATGGGTCGG
CAAAACCGCACTCCGACCATCGTTGTTGTTTGGGCAATCCTTCTGGCTTCGATCTTCTCATTGCTGTGGGTTCGCATCGA
TCCATTCACCACCCGTGTCACCGGCCCAGATACCCAAACATGTGGCATCAACTGCTAAGAAAGCAGGGGATTGTAGAGAC
AGAAATACTGCCAGTTGTGTTTTTTCAGAATACAAAGTGCCACTGCCACCAATTGTGTTTTAAGTTATTAGGAGGTGGCT
TTATTTACAGCTACGTACAGACCAGAAAATATTGCTCATCAGAAAGTTACTTGTGTCGATATGTATTCTTTTGTTGATAA
GTTATATACTATTTTGATGAGAGTGGCTGACACTGTCAACGAGTTTTGTATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10176.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis