Browse Element(s) Details


Os.52422.1.S1_s_at

Description gb:AK067003.1
DB_XREF= gi:32977021
TID=Os.52422.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52422 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013094N02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013094N02, full insert sequence.
FL= gb:AK067003.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1078011/11Remorin, C-terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10770Os.10176.1.S1_at11/117+5851080..5857018Cellulose synthase A catalytic subunit 3, putative, expressed
LOC_Os07g10780Os.52422.1.S1_s_at11/117+5863037..5864374Remorin, C-terminal region family protein, expressed
LOC_Os07g10790OsAffx.28394.1.S1_at11/117+5871641..5872185hypothetical protein
LOC_Os07g10800NANA7+5873626..5874132hypothetical protein
LOC_Os07g10810Os.17465.2.A1_at4/117+5875090..5878100hypothetical protein
LOC_Os07g10810OsAffx.29276.1.S1_at1/117+5875090..5878100hypothetical protein
LOC_Os07g10820Os.47857.1.S1_at11/117+5878489..5882657transporter, putative, expressed
LOC_Os07g10830Os.10561.1.S1_at11/117+5883650..5888229Dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kD subunit containing protein, expressed
LOC_Os07g10840Os.18257.1.S1_at11/117+5888859..5892428seed imbibition protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52422.1.S1_s_at--9--5051Chr07:5863932..5863956 (25 bp)
GCAGAGGTGCTCGACCGTGCCAACT
LOC_Os07g10780
Os.52422.1.S1_s_at--281--5831Chr07:5863944..5863968 (25 bp)
GACCGTGCCAACTTCTGCAAGGCCG
LOC_Os07g10780
Os.52422.1.S1_s_at--107--1071Chr07:5863974..5863998 (25 bp)
AGGGTGCCATCCAAGCGCTCCTTCT
LOC_Os07g10780
Os.52422.1.S1_s_at--1020--9551Chr07:5863996..5864020 (25 bp)
TCTTCTCCTTCTAAAGTTCTAACCA
LOC_Os07g10780
Os.52422.1.S1_s_at--694--6711Chr07:5864011..5864035 (25 bp)
GTTCTAACCAAAGCTAGCTAGCCTT
LOC_Os07g10780
Os.52422.1.S1_s_at--693--2691Chr07:5864021..5864045 (25 bp)
AAGCTAGCTAGCCTTGCTCAATTAT
LOC_Os07g10780
Os.52422.1.S1_s_at--288--4451Chr07:5864031..5864055 (25 bp)
GCCTTGCTCAATTATATCATCTCTA
LOC_Os07g10780
Os.52422.1.S1_s_at--1017--3131Chr07:5864040..5864064 (25 bp)
AATTATATCATCTCTAGCTAGCTAA
LOC_Os07g10780
Os.52422.1.S1_s_at--414--3771Chr07:5864051..5864075 (25 bp)
CTCTAGCTAGCTAATTATGATTATT
LOC_Os07g10780
Os.52422.1.S1_s_at--547--8831Chr07:5864068..5864092 (25 bp)
TGATTATTACTTGTTTTCTACTTAA
LOC_Os07g10780
Os.52422.1.S1_s_at--761--9871Chr07:5864075..5864099 (25 bp)
TACTTGTTTTCTACTTAATTGATCA
LOC_Os07g10780
Target Sequence 
GCAGAGGTGCTCGACCGTGCCAACTTCTGCAAGGCCGCCGGCAGGGTGCCATCCAAGCGCTCCTTCTTCTCCTTCTAAAG
TTCTAACCAAAGCTAGCTAGCCTTGCTCAATTATATCATCTCTAGCTAGCTAATTATGATTATTACTTGTTTTCTACTTA
ATTGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52422.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis