Browse Element(s) Details


Os.17465.2.A1_at

Description gb:CB624011
DB_XREF= gi:29618999
DB_XREF=OSIIEa12C16.r
CLONE=OSIIEa12C16
TID=Os.17465.2
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.17465 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_176287.1 (A.thaliana) putative U2 snRNP auxiliary factor (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g108104/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10770Os.10176.1.S1_at11/117+5851080..5857018Cellulose synthase A catalytic subunit 3, putative, expressed
LOC_Os07g10780Os.52422.1.S1_s_at11/117+5863037..5864374Remorin, C-terminal region family protein, expressed
LOC_Os07g10790OsAffx.28394.1.S1_at11/117+5871641..5872185hypothetical protein
LOC_Os07g10800NANA7+5873626..5874132hypothetical protein
LOC_Os07g10810Os.17465.2.A1_at4/117+5875090..5878100hypothetical protein
LOC_Os07g10810OsAffx.29276.1.S1_at1/117+5875090..5878100hypothetical protein
LOC_Os07g10820Os.47857.1.S1_at11/117+5878489..5882657transporter, putative, expressed
LOC_Os07g10830Os.10561.1.S1_at11/117+5883650..5888229Dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kD subunit containing protein, expressed
LOC_Os07g10840Os.18257.1.S1_at11/117+5888859..5892428seed imbibition protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17465.2.A1_at--698--10571NONE
TTCTCTTGCGTGTGAACTTCTACTT
NONE
Os.17465.2.A1_at--1051--691Chr07:5876622..5876646 (25 bp)
ATGAGTGCAGTTCCTTTTTGTTGTA
LOC_Os07g10810
Os.17465.2.A1_at--3--10411NONE
TTTTGTTGTACATCTGCGCAGGCAA
NONE
Os.17465.2.A1_at--619--2671NONE
AAGCGACACTCGATAAATTCTGCAA
NONE
Os.17465.2.A1_at--261--8691NONE
TGTGCGAGGAAAACCCGTCATATTT
NONE
Os.17465.2.A1_at--585--9791Chr07:5877148..5877172 (25 bp)
TAACTTCCATTCTTAACTAACCAGG
LOC_Os07g10810
Os.17465.2.A1_at--221--571NONE
ATCCTCTTCATGTCGGCTTGATGAT
NONE
Os.17465.2.A1_at--218--2171NONE
ACACGTGACTTGGTTCGGTCAGCGA
NONE
Os.17465.2.A1_at--1146--8291Chr07:5877394..5877418 (25 bp)
GGCTATTTGGCCATGTGACTTCTGT
LOC_Os07g10810
Os.17465.2.A1_at--521--7371Chr07:5877408..5877432 (25 bp)
GTGACTTCTGTTTTGGCGAGTGACA
LOC_Os07g10810
Os.17465.2.A1_at--505--7371NONE
GTGACTTGTGGTTGCCTATTTTGCT
NONE
Target Sequence 
TTCTCTTGCGTGTGAACTTCTACTTGTATGAGTGCAGTTCCTTTTTGTTGTACATCTGCGCAGGCAAAATTATCTGAAAG
TTCTATCAAAGACTTCAAAGGAGCGTGAAGGTTTTCTGAAGAACGAGTCCCCCAAGTTTCAAGCGACACTCGATAAATTC
TGCAAAGAAAAAGCTGCACACATGCGAACTTTCAAAGGTGAATTATATAGGTGAACCTTGTGCGAGGAAAACCCGTCATA
TTTTATCTTGAGGATAAACAAGTGTTGGAGAGTCTTGGAGGTGTTAACTTCCATTCTTAACTAACCAGGTTTCTCTATCC
TCTTCATGTCGGCTTGATGATTCATGATGGAGATGGCTGTCTTTTGATTGGTGTCATTTCGACACGTGACTTGGTTCGGT
CAGCGAATGTAAATGGCTATTTGGCCATGTGACTTCTGTTTTGGCGAGTGACAGTTTATTTTCGTTAGTGACTTGTGGTT
GCCTATTTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17465.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis