Browse Element(s) Details


Os.10561.1.S1_at

Description gb:AK058399.1
DB_XREF= gi:32968417
TID=Os.10561.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10561 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033003F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-015-B04, full insert sequence.
FL= gb:AK099319.1 gb:AK058399.1 gb:AK059111.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1083011/11Dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kD subunit containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10780Os.52422.1.S1_s_at11/117+5863037..5864374Remorin, C-terminal region family protein, expressed
LOC_Os07g10790OsAffx.28394.1.S1_at11/117+5871641..5872185hypothetical protein
LOC_Os07g10800NANA7+5873626..5874132hypothetical protein
LOC_Os07g10810Os.17465.2.A1_at4/117+5875090..5878100hypothetical protein
LOC_Os07g10810OsAffx.29276.1.S1_at1/117+5875090..5878100hypothetical protein
LOC_Os07g10820Os.47857.1.S1_at11/117+5878489..5882657transporter, putative, expressed
LOC_Os07g10830Os.10561.1.S1_at11/117+5883650..5888229Dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kD subunit containing protein, expressed
LOC_Os07g10840Os.18257.1.S1_at11/117+5888859..5892428seed imbibition protein, putative, expressed
LOC_Os07g10850Os.33878.1.S1_at6/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.55138.1.S1_x_at2/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10665.2.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10733.1.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.36409.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.27102.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10733.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.15501.2.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.30445.1.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0009826biological_processunidimensional cell growth
GO:0018279biological_processprotein amino acid N-linked glycosylation via asparagine
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0008250cellular_componentoligosaccharyl transferase complex
GO:0004579molecular_functiondolichyl-diphosphooligosaccharide-protein glycotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10561.1.S1_at--786--6511Chr07:5887341..5887365 (25 bp)
GATATACTGGTCTCTCTCTTTCTAA
LOC_Os07g10830
Os.10561.1.S1_at--769--10311Chr07:5887359..5887494 (25 bp)
TTTCTAAGCAGATTCCAGTGCGCCC
LOC_Os07g10830
Os.10561.1.S1_at--1024--7271Chr07:5887487..5887511 (25 bp)
GTGCGCCCTTACAGGCATAATGAGT
LOC_Os07g10830
Os.10561.1.S1_at--1093--1251Chr07:5887517..5887541 (25 bp)
AGATTCATAACTTCGGCATATCCGT
LOC_Os07g10830
Os.10561.1.S1_at--698--251Chr07:5887534..5887558 (25 bp)
ATATCCGTACTATGCTGCGTCGTTT
LOC_Os07g10830
Os.10561.1.S1_at--1134--4611Chr07:5887550..5887793 (25 bp)
GCGTCGTTTTCAACAATGGGAGCCT
LOC_Os07g10830
Os.10561.1.S1_at--60--431Chr07:5887799..5887823 (25 bp)
ATCTTCTCATTTGTGTACCTGTACC
LOC_Os07g10830
Os.10561.1.S1_at--371--3051Chr07:5887950..5887974 (25 bp)
AATCTAGAGCACCTTTGACGACCAC
LOC_Os07g10830
Os.10561.1.S1_at--248--5611Chr07:5887990..5888014 (25 bp)
GAAATTGTACTCCTGCTGCTAGAAT
LOC_Os07g10830
Os.10561.1.S1_at--600--4311Chr07:5888029..5888053 (25 bp)
CCTTTTCTTTCAATCTTGCCTGATG
LOC_Os07g10830
Os.10561.1.S1_at--720--2671Chr07:5888118..5888142 (25 bp)
AAGCGCATGTGAACTGTTGTCCCTT
LOC_Os07g10830
Target Sequence 
GATATACTGGTCTCTCTCTTTCTAAGCAGATTCCAGTGCGCCCTTACAGGCATAATGAGTATGAAAGATTCATAACTTCG
GCATATCCGTACTATGCTGCGTCGTTTTCAACAATGGGAGCCTNCTTCATCTTCTCATTTGTGTACCTGTACCACAAATA
GATAACTCATGAGAGAGCACGAGTTACCTGAGGCTGATGTGTGCTAGATCCATGCACTGATTGTGCTGTAAACCCAGTGT
TGGGGGTTCCAAGTTCATAGAACCATATTTTTGTAGCGCAATCTAGAGCACCTTTGACGACCACTATCATTGATAACAAG
AAATTGTACTCCTGCTGCTAGAATCTTCCAACCATCCCCCTTTTCTTTCAATCTTGCCTGATGAAGAGCTGTTGAAACTT
TCATAGTCAATAGAATCATAACAACATAAGCAATTCGGTGAGTTCGGAAGCGCATGTGAACTGTTGTCCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10561.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis