Browse Element(s) Details


Os.15501.2.S1_at

Description gb:AK065279.1
DB_XREF= gi:32975297
TID=Os.15501.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15501 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) NBS-LRR-like protein (YR48) mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002L17, full insert sequence.
FL= gb:AK065279.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g108501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10830Os.10561.1.S1_at11/117+5883650..5888229Dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kD subunit containing protein, expressed
LOC_Os07g10840Os.18257.1.S1_at11/117+5888859..5892428seed imbibition protein, putative, expressed
LOC_Os07g10850Os.33878.1.S1_at6/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.55138.1.S1_x_at2/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10665.2.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10733.1.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.36409.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.27102.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10733.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.15501.2.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.30445.1.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10860OsAffx.28395.1.S1_at11/117+5929313..5937569hypothetical protein
LOC_Os07g10860Os.25087.1.S1_at11/117+5929313..5937569hypothetical protein
LOC_Os07g10860Os.33702.1.S1_x_at1/117+5929313..5937569hypothetical protein
LOC_Os07g10870OsAffx.28397.2.S1_at11/117+5940174..5942039hypothetical protein
LOC_Os07g10880Os.17458.1.S1_at11/117+5943031..5944507expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15501.2.S1_at--1001--6311Chr05:24113713..24113737 (25 bp)
GATGAACCCCAAGTGACGAGTCAAG
NONE
Os.15501.2.S1_at--95--2851Chr05:24113691..24113715 (25 bp)
AAGTCTGCAATTTCCTGGTTAGGCC
NONE
Os.15501.2.S1_at--91--5311Chr05:24113640..24113664 (25 bp)
GAAGGAAAAGACACTGCTGCAGGCT
NONE
Os.15501.2.S1_at--106--5111Chr05:24113615..24113639 (25 bp)
GCAACTTGGCCACAACTTCAGTGTA
NONE
Os.15501.2.S1_at--1046--931Chr05:24112496..24112520 (25 bp)
AGGAATCGCTGGTGATTATCCATTC
NONE
Os.15501.2.S1_at--934--91Chr05:24112475..24112499 (25 bp)
ATTCCCGTATCACTGCAAACAGCTG
NONE
Os.15501.2.S1_at--969--7731Chr05:24111690..24111714 (25 bp)
GGTGGTACATACAGAAGAGCCCTAA
NONE
Os.15501.2.S1_at--615--952Chr07:5921563..5921623 (24 bp)
AGGAAAGAGGCATCTGTCGCACCGC
LOC_Os07g10850
Os.15501.2.S1_at--599--3531Chr05:24111599..24111623 (25 bp)
CATGCGATTTTGTGCTTAGTCCAGT
NONE
Os.15501.2.S1_at--586--2891Chr05:24111557..24111581 (25 bp)
AAGGTGGTCGTATTGAGCGGATTCA
NONE
Os.15501.2.S1_at--33--1631Chr05:24111542..24111566 (25 bp)
AGCGGATTCACCGACAAGTTCTTCC
NONE
Target Sequence 
GATGAACCCCAAGTGACGAGTCAAGTCTGCAATTTCCTGGTTAGGCCGGTGAAAGGAGCATGTTGGACTTTTAGAAGGAA
AAGACACTGCTGCAGGCTGCAACTTGGCCACAACTTCAGTGTAAGACAGCTGATGTAACAACTTCTATCAAGGGCGTTGC
CTCGCCGTTGTTTCTTCCTTAAGGAATCGCTGGTGATTATCCATTCCCGTATCACTGCAAACAGCTGCTACTGTCCCTTC
CTGTATCTCATTCCCTGAATTGAAGGTGGTACATACAGAAGAGCCCTAACTATAGGCAAAGGAGGAAAGAGGCATCTGTC
GCACCGCGCGCCTCTGCTGCTCAAAAGGCTAAAATCATGCGATTTTGTGCTTAGTCCAGTAAACATTGGGAAGTTAGAAG
GTGGTCGTATTGAGCGGATTCACCGACAAGTTCTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15501.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis