Browse Element(s) Details


Os.25087.1.S1_at

Description gb:AK108416.1
DB_XREF= gi:32993625
TID=Os.25087.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25087 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-H08, full insert sequence.
FL= gb:AK108416.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1086011/11hypothetical protein
LOC_Os02g101801/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10850Os.33878.1.S1_at6/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.55138.1.S1_x_at2/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10665.2.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10733.1.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.36409.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.27102.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10733.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.15501.2.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.30445.1.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10860OsAffx.28395.1.S1_at11/117+5929313..5937569hypothetical protein
LOC_Os07g10860Os.25087.1.S1_at11/117+5929313..5937569hypothetical protein
LOC_Os07g10860Os.33702.1.S1_x_at1/117+5929313..5937569hypothetical protein
LOC_Os07g10870OsAffx.28397.2.S1_at11/117+5940174..5942039hypothetical protein
LOC_Os07g10880Os.17458.1.S1_at11/117+5943031..5944507expressed protein
LOC_Os07g10890Os.38857.1.S1_a_at11/117+5949034..5953989HALF-1 transcription factor, putative, expressed
LOC_Os07g10890OsAffx.16202.1.S1_at9/117+5949034..5953989HALF-1 transcription factor, putative, expressed
LOC_Os07g10900Os.2987.3.S1_x_at2/117+5958991..5961675retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g10900OsAffx.8980.1.S1_at1/117+5958991..5961675retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g10900OsAffx.8272.1.S1_at1/117+5958991..5961675retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0000740biological_processnuclear membrane fusion
GO:0006281biological_processDNA repair
GO:0006457biological_processprotein folding
GO:0009411biological_processresponse to UV
GO:0009553biological_processfemale gametophyte development
GO:0009558biological_processcellularization of megagametophyte
GO:0010197biological_processpolar nuclei fusion
GO:0010198biological_processsynergid death
GO:0051085biological_processchaperone cofactor dependent protein folding
GO:0005739cellular_componentmitochondrion
GO:0016035cellular_componentzeta DNA polymerase complex
GO:0003677molecular_functionDNA binding
GO:0003894molecular_functionzeta DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25087.1.S1_at--287--6771Chr07:5937109..5937133 (25 bp)
GTTAACAATTGATCTTCTCTCAACC
LOC_Os07g10860
Os.25087.1.S1_at--307--9852Chr07:5937149..5937173 (25 bp)
TACTTGACCTGGTAAATGGAATCCC
LOC_Os07g10860
Os.25087.1.S1_at--225--4211Chr07:5937172..5937196 (25 bp)
CCCCACATTTATCGTGCTGGTACAT
LOC_Os07g10860
Os.25087.1.S1_at--1110--10411Chr07:5937180..5937204 (25 bp)
TTATCGTGCTGGTACATCATCAAGA
LOC_Os07g10860
Os.25087.1.S1_at--840--6512Chr07:5937203..5937227 (25 bp)
GATATTGCTATTTGAGATTTCCTTT
LOC_Os07g10860
Os.25087.1.S1_at--341--6051Chr07:5937216..5937313 (25 bp)
GAGATTTCCTTTGTATTTCCAGTTG
LOC_Os07g10860
Os.25087.1.S1_at--936--2391Chr07:5937242..5937266 (25 bp)
AAACTTTTATCAATTTTGCATCTTC
LOC_Os07g10860
Os.25087.1.S1_at--741--10731Chr07:5937257..5937281 (25 bp)
TTGCATCTTCTCCTTAACAATCTCC
LOC_Os07g10860
Os.25087.1.S1_at--218--2451Chr07:5937272..5937296 (25 bp)
AACAATCTCCTAGCCACGATTTATC
LOC_Os07g10860
Os.25087.1.S1_at--370--9251Chr07:5937279..5937303 (25 bp)
TCCTAGCCACGATTTATCACACAGA
LOC_Os07g10860
Os.25087.1.S1_at--1039--371Chr07:5937294..5937318 (25 bp)
ATCACACAGAAATGCAGTTGGTTTT
LOC_Os07g10860
Target Sequence 
GTTAACAATTGATCTTCTCTCAACCTTGAAATATTAAATATACTTGACCTGGTAAATGGAATCCCCCACATTTATCGTGC
TGGTACATCATCAAGATATTGCTATTTGAGATTTCCTTTGTATTTCCAGTTGAAAACTTTTATCAATTTTGCATCTTCTC
CTTAACAATCTCCTAGCCACGATTTATCACACAGAAATGCAGTTGGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25087.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis