Browse Element(s) Details


OsAffx.10733.1.S1_at

Description gb:NM_183576.1
DB_XREF= gi:34894279
TID=OsAffx.10733.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g108501/11retrotransposon protein, putative, unclassified
LOC_Os05g476601/11Lipid phosphate phosphatase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10830Os.10561.1.S1_at11/117+5883650..5888229Dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kD subunit containing protein, expressed
LOC_Os07g10840Os.18257.1.S1_at11/117+5888859..5892428seed imbibition protein, putative, expressed
LOC_Os07g10850Os.33878.1.S1_at6/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.55138.1.S1_x_at2/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10665.2.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10733.1.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.36409.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.27102.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10733.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.15501.2.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.30445.1.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10860OsAffx.28395.1.S1_at11/117+5929313..5937569hypothetical protein
LOC_Os07g10860Os.25087.1.S1_at11/117+5929313..5937569hypothetical protein
LOC_Os07g10860Os.33702.1.S1_x_at1/117+5929313..5937569hypothetical protein
LOC_Os07g10870OsAffx.28397.2.S1_at11/117+5940174..5942039hypothetical protein
LOC_Os07g10880Os.17458.1.S1_at11/117+5943031..5944507expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006644biological_processphospholipid metabolism
GO:0006950biological_processresponse to stress
GO:0009738biological_processabscisic acid mediated signaling
GO:0005887cellular_componentintegral to plasma membrane
GO:0008195molecular_functionphosphatidate phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10733.1.S1_at--589--5951Chr01:10393888..10393912 (25 bp)
GAGCAATTCCCTCACTCTCAACGGG
NONE
OsAffx.10733.1.S1_at--896--9511Chr01:10393873..10393897 (25 bp)
TCTCAACGGGCTCTGTCTCCATGCG
NONE
OsAffx.10733.1.S1_at--715--4232Chr04:19612891..19612915 (25 bp)
CCGAGATCGTGAGGAGGGCACCGAT
NONE
OsAffx.10733.1.S1_at--917--3351Chr01:10393823..10393847 (25 bp)
CACCGATGGTAAAGGGCGACGACGT
NONE
OsAffx.10733.1.S1_at--202--4151Chr01:10393773..10393797 (25 bp)
CGCGGAGGCGTTAGGGCTGGCTCTC
NONE
OsAffx.10733.1.S1_at--1157--2931Chr01:10393637..10393661 (25 bp)
AAGGCGTCGGGCCGCTCAGCCTCAT
NONE
OsAffx.10733.1.S1_at--121--2359Chr06:7845233..7845345 (25 bp)
AAAGAAAGGATGTCACGTCAGCGAA
NONE
OsAffx.10733.1.S1_at--696--9652Chr02:32702375..32702399 (25 bp)
TCAGCGAAACCGGATATCCATACTG
NONE
OsAffx.10733.1.S1_at--405--5552Chr02:32702372..32702394 (23 bp)
GAAACCGGATATCCATACTGCTATG
NONE
OsAffx.10733.1.S1_at--116--4872Chr04:19612639..19612663 (25 bp)
GCTATGGGACCTAAAATGCACAGTT
NONE
OsAffx.10733.1.S1_at--1053--8612Chr04:19612635..19612659 (25 bp)
TGGGACCTAAAATGCACAGTTTTGT
NONE
Target Sequence 
GAGCAATTCCCTCACTCTCAACGGGCTCTGTCTCCATGCGCGCCGCGCCGAGATCGTGAGGAGGGCACCGATGGTAAAGG
GCGACGACGTCATCGCCGCCGACGAGGCCGAGCGGCGCGGAGGCGTTAGGGCTGGCTCTCCCCATCTGCCGCCGCTGTCA
GAAGAGAAGAAAGTAAAAAAAAAGGAGAAGAAAGAAAACCAATGGTGGAGGGCGACAGAGGCCACCGCCGCCGATGAGGC
TGAGCGGCGTGAAGGCGTCGGGCCGCTCAGCCTCATCGGCGGCCGGCTCTCCCCATCTGCCGCCATTGTCAGAAGAGAAG
AAAATAAAAAAAAAACAAATAGATGTAAGAAAAAAGGGGAAGAAAAAAGAAAGGATGTCACGTCAGCGAAACCGGATATC
CATACTGCTATGGGACCTAAAATGCACAGTTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10733.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis