Browse Element(s) Details


OsAffx.28397.2.S1_at

Description tigr:9635.m01058
TID=OsAffx.28397.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1087011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10850Os.33878.1.S1_at6/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.55138.1.S1_x_at2/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10665.2.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10733.1.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.36409.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.27102.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.10733.1.S1_x_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850Os.15501.2.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10850OsAffx.30445.1.S1_at1/117+5910129..5922666retrotransposon protein, putative, unclassified
LOC_Os07g10860OsAffx.28395.1.S1_at11/117+5929313..5937569hypothetical protein
LOC_Os07g10860Os.25087.1.S1_at11/117+5929313..5937569hypothetical protein
LOC_Os07g10860Os.33702.1.S1_x_at1/117+5929313..5937569hypothetical protein
LOC_Os07g10870OsAffx.28397.2.S1_at11/117+5940174..5942039hypothetical protein
LOC_Os07g10880Os.17458.1.S1_at11/117+5943031..5944507expressed protein
LOC_Os07g10890Os.38857.1.S1_a_at11/117+5949034..5953989HALF-1 transcription factor, putative, expressed
LOC_Os07g10890OsAffx.16202.1.S1_at9/117+5949034..5953989HALF-1 transcription factor, putative, expressed
LOC_Os07g10900Os.2987.3.S1_x_at2/117+5958991..5961675retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g10900OsAffx.8980.1.S1_at1/117+5958991..5961675retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g10900OsAffx.8272.1.S1_at1/117+5958991..5961675retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28397.2.S1_at--577--4211Chr07:5940425..5940447 (23 bp)
CCGCAATGCGCGTGGTTTTATCTAG
LOC_Os07g10870
OsAffx.28397.2.S1_at--691--4551Chr07:5940418..5940442 (25 bp)
GCGCGTGGTTTTATCTAGTAACTGT
LOC_Os07g10870
OsAffx.28397.2.S1_at--909--5511Chr07:5940386..5940410 (25 bp)
GAAAACAATTTAGCTCACCCAAGAA
LOC_Os07g10870
OsAffx.28397.2.S1_at--245--2712Chr07:5940361..5940385 (25 bp)
AAGCATTACCTCAGGTTGCACGTAA
LOC_Os07g10870
OsAffx.28397.2.S1_at--788--8171Chr07:5940335..5940359 (25 bp)
GGAACCATTTTGGAGTCAGCAATCT
LOC_Os07g10870
OsAffx.28397.2.S1_at--1027--1451Chr07:5940318..5940342 (25 bp)
AGCAATCTTCCGTGTGGATCTGGCT
LOC_Os07g10870
OsAffx.28397.2.S1_at--120--6411Chr07:5940302..5940326 (25 bp)
GATCTGGCTGAATATGAGCTGACAC
LOC_Os07g10870
OsAffx.28397.2.S1_at--139--10132Chr07:5940290..5940314 (25 bp)
TATGAGCTGACACCAAGTACCCTTG
LOC_Os07g10870
OsAffx.28397.2.S1_at--129--3231Chr07:5940277..5940301 (25 bp)
CAAGTACCCTTGACTATGACGGAAA
LOC_Os07g10870
OsAffx.28397.2.S1_at--811--1991Chr07:5940250..5940274 (25 bp)
ACTTTACCCAAGTATATGCTTATTA
LOC_Os07g10870
OsAffx.28397.2.S1_at--252--2311Chr07:5940212..5940236 (25 bp)
AAAGGATTCAATGGGTCAGAGCAGA
LOC_Os07g10870
Target Sequence 
CCGCAATGCGCGTGGTTTTATCTAGTAACTGTAATGTTTGAAAACAATTTAGCTCACCCAAGAAAAGCATTACCTCAGGT
TGCACGTAAAGGAACCATTTTGGAGTCAGCAATCTTCCGTGTGGATCTGGCTGAATATGAGCTGACACCAAGTACCCTTG
ACTATGACGGAAAAAACTTTACCCAAGTATATGCTTATTATCATGGAGGGATAAAAGGATTCAATGGGTCAGAGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28397.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis