Browse Element(s) Details


OsAffx.16202.1.S1_at

Description tigr:9635.m01060
TID=OsAffx.16202.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to bZIP protein - wheat (fragment)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g108909/11HALF-1 transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10860OsAffx.28395.1.S1_at11/117+5929313..5937569hypothetical protein
LOC_Os07g10860Os.25087.1.S1_at11/117+5929313..5937569hypothetical protein
LOC_Os07g10860Os.33702.1.S1_x_at1/117+5929313..5937569hypothetical protein
LOC_Os07g10870OsAffx.28397.2.S1_at11/117+5940174..5942039hypothetical protein
LOC_Os07g10880Os.17458.1.S1_at11/117+5943031..5944507expressed protein
LOC_Os07g10890Os.38857.1.S1_a_at11/117+5949034..5953989HALF-1 transcription factor, putative, expressed
LOC_Os07g10890OsAffx.16202.1.S1_at9/117+5949034..5953989HALF-1 transcription factor, putative, expressed
LOC_Os07g10900Os.2987.3.S1_x_at2/117+5958991..5961675retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g10900OsAffx.8980.1.S1_at1/117+5958991..5961675retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g10900OsAffx.8272.1.S1_at1/117+5958991..5961675retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g10910Os.10286.2.A1_at11/117+5970401..5975221Exo70 exocyst complex subunit family protein, expressed
LOC_Os07g10910Os.10286.1.S1_x_at11/117+5970401..5975221Exo70 exocyst complex subunit family protein, expressed
LOC_Os07g10920Os.38820.1.S1_at11/117+5971908..5977368expressed protein
LOC_Os07g10920Os.53060.1.S1_at11/117+5971908..5977368expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16202.1.S1_at--425--2931Chr07:5950736..5950760 (25 bp)
AAGGAAATCTGGTAATACATCGGCA
LOC_Os07g10890
OsAffx.16202.1.S1_at--845--491Chr07:5950754..5950875 (25 bp)
ATCGGCAGAAGGTGAGCCGTCTCAA
LOC_Os07g10890
OsAffx.16202.1.S1_at--1138--7891NONE
GGTTGCGCAAGCAGGTTGGATACCT
NONE
OsAffx.16202.1.S1_at--854--4991NONE
GCAGGTTGGATACCTCTATGGGTCT
NONE
OsAffx.16202.1.S1_at--870--3911Chr07:5952183..5952207 (25 bp)
CTGGCAGTAGATGGCAGACCTGGAA
LOC_Os07g10890
OsAffx.16202.1.S1_at--315--2411Chr07:5952210..5952234 (25 bp)
AAACACTTATTCTGCTTGGTGCTGC
LOC_Os07g10890
OsAffx.16202.1.S1_at--419--4931Chr07:5952223..5952247 (25 bp)
GCTTGGTGCTGCCATATTTCTGGCA
LOC_Os07g10890
OsAffx.16202.1.S1_at--747--8871Chr07:5952292..5952316 (25 bp)
TGATGTCAGCACTTCACCAGATGTT
LOC_Os07g10890
OsAffx.16202.1.S1_at--263--1731Chr07:5952307..5952331 (25 bp)
ACCAGATGTTGGCTTGTCTGCACAC
LOC_Os07g10890
OsAffx.16202.1.S1_at--563--4931Chr07:5952318..5952342 (25 bp)
GCTTGTCTGCACACGGGCAATATGC
LOC_Os07g10890
OsAffx.16202.1.S1_at--1082--8211Chr07:5952333..5952357 (25 bp)
GGCAATATGCACAACAAGCCATGCT
LOC_Os07g10890
Target Sequence 
AAGGAAATCTGGTAATACATCGGCAGAAGGTGAGCCGTCTCAAGCTACGCTTGTGCCCTATGCTGCTGTCGAGTCACCGT
ATCCGTTGAAGGGGAGGTCTGCGTCGAAGCTTCCAGTTTCTGCACCAGGGCGGGCGGCACTTCCTAATGCCACACCTAAT
TTGAACATAGGGATAGATCTTTGGAGTACTCCCCCAGCCTTAGCTGTGCCCGCAGGGCAGGGGGAAGCAAGTCCTGGGTT
GGCACTTGCTCGACGTGATGGTGTTGCTCACCTGGATGAGCGTGAATTGAAGAGGGAGAGGCGCAAACAATCTAACAGAG
AGTCTGCCAGGAGATCAAGGTTGCGCAAGCAGGTTGGATACCTCTATGGGTCTGGCAGTAGATGGCAGACCTGGAAAGAA
ACACTTATTCTGCTTGGTGCTGCCATATTTCTGGCAGGAGGAATAGAGTGCATGCTAGATGCCGGGAGAGGCATTTGGTA
TGATGTCAGCACTTCACCAGATGTTGGCTTGTCTGCACACGGGCAATATGCACAACAAGCCATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16202.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis