Browse Element(s) Details


Os.53060.1.S1_at

Description gb:AK070643.1
DB_XREF= gi:32980667
TID=Os.53060.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53060 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023063I17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063I17, full insert sequence.
FL= gb:AK070643.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1092011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10890Os.38857.1.S1_a_at11/117+5949034..5953989HALF-1 transcription factor, putative, expressed
LOC_Os07g10890OsAffx.16202.1.S1_at9/117+5949034..5953989HALF-1 transcription factor, putative, expressed
LOC_Os07g10900Os.2987.3.S1_x_at2/117+5958991..5961675retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g10900OsAffx.8980.1.S1_at1/117+5958991..5961675retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g10900OsAffx.8272.1.S1_at1/117+5958991..5961675retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g10910Os.10286.2.A1_at11/117+5970401..5975221Exo70 exocyst complex subunit family protein, expressed
LOC_Os07g10910Os.10286.1.S1_x_at11/117+5970401..5975221Exo70 exocyst complex subunit family protein, expressed
LOC_Os07g10920Os.38820.1.S1_at11/117+5971908..5977368expressed protein
LOC_Os07g10920Os.53060.1.S1_at11/117+5971908..5977368expressed protein
LOC_Os07g10930NANA7+5984759..5985181hypothetical protein
LOC_Os07g10940OsAffx.28398.1.S1_at11/117+5986157..5995495Exo70 exocyst complex subunit family protein
LOC_Os07g10940Os.54910.1.S1_at1/117+5986157..5995495Exo70 exocyst complex subunit family protein
LOC_Os07g10950OsAffx.617.1.A1_at11/117+5998924..6002836hypothetical protein
LOC_Os07g10950OsAffx.617.1.A1_x_at11/117+5998924..6002836hypothetical protein
LOC_Os07g10950OsAffx.27854.1.S1_at1/117+5998924..6002836hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53060.1.S1_at--384--1271Chr07:5975719..5975743 (25 bp)
AGATACCTTGAGCTCTCATGGCTAC
LOC_Os07g10920
Os.53060.1.S1_at--1093--9951Chr07:5975697..5975721 (25 bp)
TACCCGTCATGTCTTGCTTGGATGC
LOC_Os07g10920
Os.53060.1.S1_at--398--10871Chr07:5975680..5975704 (25 bp)
TTGGATGCTCATACACCGACGCAAG
LOC_Os07g10920
Os.53060.1.S1_at--662--951Chr07:5975539..5975563 (25 bp)
AGGAAAGCTGTTTCATCCCATGTCG
LOC_Os07g10920
Os.53060.1.S1_at--160--551Chr07:5975525..5975549 (25 bp)
ATCCCATGTCGTCCAATGTTATCAG
LOC_Os07g10920
Os.53060.1.S1_at--1023--9351Chr07:5975424..5975448 (25 bp)
TCGAAGGGTAGACTGCTTGCTGCAA
LOC_Os07g10920
Os.53060.1.S1_at--648--5231Chr07:5975376..5975400 (25 bp)
GAATCAAACCCCTGTTAATGCTCAC
LOC_Os07g10920
Os.53060.1.S1_at--265--191Chr07:5975308..5975332 (25 bp)
ATTTCTGGTAATGCACTTTCCTCTT
LOC_Os07g10920
Os.53060.1.S1_at--251--2051Chr07:5975294..5975318 (25 bp)
ACTTTCCTCTTGTGTACTCTTGTAT
LOC_Os07g10920
Os.53060.1.S1_at--143--3751Chr07:5975278..5975302 (25 bp)
CTCTTGTATTCGTGTTCAGGATGGC
LOC_Os07g10920
Os.53060.1.S1_at--161--10211Chr07:5975249..5975273 (25 bp)
TATTTTACTATGTTCTTTCCCTGTT
LOC_Os07g10920
Target Sequence 
AGATACCTTGAGCTCTCATGGCTACCCGTCATGTCTTGCTTGGATGCTCATACACCGACGCAAGCACTGTTCCCTTGCTT
TCATCTACCCCTGACGACTAGGTTTTACGAGATGCTGGAGAGCACTTGTGCAGAGCAACAGAACTGGAGAATTGAGGATC
CGAAACTTCGGAACAATGTGAGGAAAGCTGTTTCATCCCATGTCGTCCAATGTTATCAGGCACACTTGCAGAAGAAGGGT
ATGAAGCTCCATAAGTATATCCCCCAGGAAATTGAGAATAAGCTGATGGAGTTATTCGAAGGGTAGACTGCTTGCTGCAA
AAGTTAGATTATATATAGAACCAGAATCAAACCCCTGTTAATGCTCACTACAACAGTTTTTGATTATTTGTACAATCAGA
ACCAGTGTGAAATTTCTGGTAATGCACTTTCCTCTTGTGTACTCTTGTATTCGTGTTCAGGATGGCGAAATATTTTACTA
TGTTCTTTCCCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53060.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis