Browse Element(s) Details


OsAffx.617.1.A1_x_at

Description tigr:9635.m01067
TID=OsAffx.617.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0250011/11hypothetical protein
LOC_Os03g4413011/11expressed protein
LOC_Os07g1095011/11hypothetical protein
LOC_Os10g3303011/11hypothetical protein
LOC_Os09g0357010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02460Os.30866.1.S1_at11/117+847265..848039expressed protein
LOC_Os07g02470OsAffx.16047.1.S1_x_at11/117+850804..853321hypothetical protein
LOC_Os07g02470OsAffx.16047.2.S1_at11/117+850804..853321hypothetical protein
LOC_Os07g02480Os.40486.1.S1_at1/117+856026..858194hypothetical protein
LOC_Os07g02490OsAffx.15220.1.S1_s_at11/117+863342..869930retrotransposon protein, putative, unclassified
LOC_Os07g02490OsAffx.15220.2.S1_s_at8/117+863342..869930retrotransposon protein, putative, unclassified
LOC_Os07g02500OsAffx.617.1.A1_x_at11/117+871299..872596hypothetical protein
LOC_Os07g02500OsAffx.617.1.A1_at11/117+871299..872596hypothetical protein
LOC_Os07g02510OsAffx.19542.3.S1_x_at7/117+878723..882945retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g02520OsAffx.21076.1.S1_at11/117+893613..895976hypothetical protein
LOC_Os07g02530OsAffx.21075.1.S1_at9/117+897399..898078hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.617.1.A1_x_at--888--35Chr07:871657..871681 (25 bp)
ATTGTTTGCCGCCTGAATACAAAAT
LOC_Os07g02500
OsAffx.617.1.A1_x_at--541--3155Chr07:871679..871703 (25 bp)
AATTCGGTACATCATTTACGACCAA
LOC_Os07g02500
OsAffx.617.1.A1_x_at--1146--354Chr07:872001..872025 (25 bp)
ATAATTGTGCAGGTCGTTATGCTGA
LOC_Os07g02500
OsAffx.617.1.A1_x_at--235--8075Chr07:872028..872225 (25 bp)
GGAGAACTCGCCATGCATTCACCTA
LOC_Os07g02500
OsAffx.617.1.A1_x_at--303--10015Chr07:872254..872278 (25 bp)
TAGCTCGGCACAAACACCTTCAGAG
LOC_Os07g02500
OsAffx.617.1.A1_x_at--656--995Chr07:872277..872301 (25 bp)
AGGTTCCTGAATCTCGACCTGGGAA
LOC_Os07g02500
OsAffx.617.1.A1_x_at--6--8035Chr07:872410..872434 (25 bp)
GGAGGATCCTTACAGCATCAACAAG
LOC_Os07g02500
OsAffx.617.1.A1_x_at--888--6895Chr07:872436..872460 (25 bp)
GTATCACAGTGCTTGAAGGTTTACA
LOC_Os07g02500
OsAffx.617.1.A1_x_at--96--7735Chr07:872485..872509 (25 bp)
GGTGGCAGCTGATATCTTCAAAGGT
LOC_Os07g02500
OsAffx.617.1.A1_x_at--115--5355Chr07:872522..872546 (25 bp)
GAAGTTTTCTTGTCCTTTTCAAGTG
LOC_Os07g02500
OsAffx.617.1.A1_x_at--586--9735Chr07:872540..872564 (25 bp)
TCAAGTGATGCATTACGCCTGGCTT
LOC_Os07g02500
Target Sequence 
ATTGTTTGCCGCCTGAATACAAAATTCGGTACATCATTTACGACCAACCAAGTCAAGCAAAAGGAGCAGGATTTGAAGAA
AGATTATCGCAGTGTTAAAGATTTGTTGGATCAAAGTGGTTTTGGGTGGGATAGTGACAGAATGATGGCAAGTTATGCTG
ATCGTGAGGAGAATATAATTGTGCAGGTCGTTATGCTGAAGGGAGAACTCGCCATGCATTCACCTACCCCTGTCCATCTC
ACAAAAGTCCCACCTAGCTCGGCACAAACACCTTCAGAGGTTCCTGAATCTCGACCTGGGAAGAAACAAAAGATCAAATC
TGTTAGTCCTGATGATGGATTTCATGAGAGATACCTAAAACTTAAAAAAGAAGAAATAGATCGATTTGCTGCAATTGAGG
AGAAGAAATTGGAGGATCCTTACAGCATCAACAAGTGTATCACAGTGCTTGAAGGTTTACATGGTCTACAAATAGGAGAT
ATATTGGTGGCAGCTGATATCTTCAAAGGTAAGGATAATAGGGAAGTTTTCTTGTCCTTTTCAAGTGATGCATTACGCCT
GGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.617.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis