Browse Element(s) Details


OsAffx.16047.1.S1_x_at

Description gb:NM_194143.1
DB_XREF= gi:34915323
GEN=OJ1138_B05.17
TID=OsAffx.16047.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) proteophosphoglycan-like (OJ1138_B05.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0247011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02410OsAffx.25903.2.S1_at10/117+824492..826048transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g02420OsAffx.16046.1.S1_at11/117+829996..831333hypothetical protein
LOC_Os07g02430Os.28541.1.S1_at11/117+832612..834027expressed protein
LOC_Os07g02430OsAffx.29773.1.S1_s_at1/117+832612..834027expressed protein
LOC_Os07g02440Os.36995.1.S1_at11/117+836369..839617Peroxidase 50 precursor, putative, expressed
LOC_Os07g02450OsAffx.28234.1.S1_at10/117+840165..842998Leucine Rich Repeat family protein, expressed
LOC_Os07g02460Os.30866.1.S1_at11/117+847265..848039expressed protein
LOC_Os07g02470OsAffx.16047.1.S1_x_at11/117+850804..853321hypothetical protein
LOC_Os07g02470OsAffx.16047.2.S1_at11/117+850804..853321hypothetical protein
LOC_Os07g02480Os.40486.1.S1_at1/117+856026..858194hypothetical protein
LOC_Os07g02490OsAffx.15220.1.S1_s_at11/117+863342..869930retrotransposon protein, putative, unclassified
LOC_Os07g02490OsAffx.15220.2.S1_s_at8/117+863342..869930retrotransposon protein, putative, unclassified
LOC_Os07g02500OsAffx.617.1.A1_x_at11/117+871299..872596hypothetical protein
LOC_Os07g02500OsAffx.617.1.A1_at11/117+871299..872596hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16047.1.S1_x_at--850--7331Chr07:851923..851947 (25 bp)
GTGCATGGGTTAGTATCCTCGGGAT
LOC_Os07g02470
OsAffx.16047.1.S1_x_at--987--2831Chr07:852588..852612 (25 bp)
AAGTATGCTAATTCGCTGTCAGGAA
LOC_Os07g02470
OsAffx.16047.1.S1_x_at--442--8191Chr07:852617..852641 (25 bp)
GGAAGCTCTGAATGCTACCGTTCTT
LOC_Os07g02470
OsAffx.16047.1.S1_x_at--177--4451Chr07:852643..852667 (25 bp)
GCCTTCCTGTCTCTGATGGAGCAGT
LOC_Os07g02470
OsAffx.16047.1.S1_x_at--115--3011Chr07:852786..852810 (25 bp)
AATGCTGTTGGCTCTGCAGTTGATG
LOC_Os07g02470
OsAffx.16047.1.S1_x_at--507--6791Chr07:852838..853036 (25 bp)
GTTATCTACTGCCTAAGCTAGCCAG
LOC_Os07g02470
OsAffx.16047.1.S1_x_at--894--2291Chr07:853040..853064 (25 bp)
AAATGTGTTGGTGTCTCAGCTGTCC
LOC_Os07g02470
OsAffx.16047.1.S1_x_at--407--7451Chr07:853050..853074 (25 bp)
GTGTCTCAGCTGTCCATAATTACCA
LOC_Os07g02470
OsAffx.16047.1.S1_x_at--607--5491Chr07:853080..853104 (25 bp)
GAACAGGTTCTAATGGCGCAGTGCA
LOC_Os07g02470
OsAffx.16047.1.S1_x_at--1073--7331Chr07:853100..853124 (25 bp)
GTGCAGAGAGTTGCTGTCCACACTA
LOC_Os07g02470
OsAffx.16047.1.S1_x_at--745--10011Chr07:853123..853242 (25 bp)
TAGCACTGATGCACGTGAAGTACAG
LOC_Os07g02470
Target Sequence 
GTGCATGGGTTAGTATCCTCGGGATGAGCAAATCGATTGCGCTCAAGAAGTTGGAGCTACAGTTACTGAGACAAAATTGT
AAAGTCATGAATACTCTGAAGGGCCAAATGGCATATCTGGAAGAGTGGTCCTTACTGGAGAACAAGTATGCTAATTCGCT
GTCAGGAACAGTGGAAGCTCTGAATGCTACCGTTCTTCGCCTTCCTGTCTCTGATGGAGCAGTGGCAGATTTTCAGTCTG
TCAAAAATGCTGTTGGCTCTGCAGTTGATGTCATGCAGACAATGAGAAACTCAATGAGTTATCTACTGCCTAAGCTAGCC
AGGACAAATGTGTTGGTGTCTCAGCTGTCCATAATTACCAGACAAGAACAGGTTCTAATGGCGCAGTGCAGAGAGTTGCT
GTCCACACTAGCACTGATGCACGTGAAGTACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16047.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis