Browse Element(s) Details


OsAffx.28234.1.S1_at

Description tigr:9635.m00151
TID=OsAffx.28234.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=135818 AWJL218 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0245010/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02380OsAffx.5182.1.S1_at11/117+816718..817085hypothetical protein
LOC_Os07g02390OsAffx.28233.1.S1_at11/117+817508..820435hypothetical protein
LOC_Os07g02400OsAffx.5183.1.S1_at11/117+820767..821977hypothetical protein
LOC_Os07g02400OsAffx.5183.1.S1_x_at11/117+820767..821977hypothetical protein
LOC_Os07g02410OsAffx.25903.2.S1_at10/117+824492..826048transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g02420OsAffx.16046.1.S1_at11/117+829996..831333hypothetical protein
LOC_Os07g02430Os.28541.1.S1_at11/117+832612..834027expressed protein
LOC_Os07g02430OsAffx.29773.1.S1_s_at1/117+832612..834027expressed protein
LOC_Os07g02440Os.36995.1.S1_at11/117+836369..839617Peroxidase 50 precursor, putative, expressed
LOC_Os07g02450OsAffx.28234.1.S1_at10/117+840165..842998Leucine Rich Repeat family protein, expressed
LOC_Os07g02460Os.30866.1.S1_at11/117+847265..848039expressed protein
LOC_Os07g02470OsAffx.16047.1.S1_x_at11/117+850804..853321hypothetical protein
LOC_Os07g02470OsAffx.16047.2.S1_at11/117+850804..853321hypothetical protein
LOC_Os07g02480Os.40486.1.S1_at1/117+856026..858194hypothetical protein
LOC_Os07g02490OsAffx.15220.1.S1_s_at11/117+863342..869930retrotransposon protein, putative, unclassified
LOC_Os07g02490OsAffx.15220.2.S1_s_at8/117+863342..869930retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009598biological_processdetection of pathogenic bacteria
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28234.1.S1_at--675--3271Chr07:841707..841731 (25 bp)
CAACAAGATTGGTACCCTGCAGTCA
LOC_Os07g02450
OsAffx.28234.1.S1_at--609--8211Chr07:841734..841758 (25 bp)
GGAATCTCTTGACCTCTCTAAGAAC
LOC_Os07g02450
OsAffx.28234.1.S1_at--559--7511Chr07:841769..841793 (25 bp)
GTGGAATCCCATCGAGCTTATCAAG
LOC_Os07g02450
OsAffx.28234.1.S1_at--141--9731Chr07:841789..841813 (25 bp)
TCAAGTTTGGCATTCCTAAGCTACT
LOC_Os07g02450
OsAffx.28234.1.S1_at--701--10151Chr07:841835..841859 (25 bp)
TATCTGGAATGATACCCTCAGGCCG
LOC_Os07g02450
OsAffx.28234.1.S1_at--174--5631Chr07:841867..841891 (25 bp)
GACACCCTCAGTGCAAATGATCCAT
LOC_Os07g02450
OsAffx.28234.1.S1_at--1157--10831Chr07:841920..841944 (25 bp)
TTGTGGACCTCCTCTTCAAAAGAAC
LOC_Os07g02450
OsAffx.28234.1.S1_at--76--491Chr07:842038..842062 (25 bp)
ATCTGGGTGGTATTTTGTGTCCTGC
LOC_Os07g02450
OsAffx.28234.1.S1_at--844--191Chr07:842090..842114 (25 bp)
ATTTCCGGCTCTTTGACAAGCTGTA
LOC_Os07g02450
OsAffx.28234.1.S1_at--249--10331NONE
TTTACGTATTCTTGGTTGGCGGCAC
NONE
OsAffx.28234.1.S1_at--718--7991Chr07:842863..842887 (25 bp)
GGAGGCTTTATCGATCGCGGGACAC
LOC_Os07g02450
Target Sequence 
CAACAAGATTGGTACCCTGCAGTCATTGGAATCTCTTGACCTCTCTAAGAACAAACTTTCTGGTGGAATCCCATCGAGCT
TATCAAGTTTGGCATTCCTAAGCTACTTGAATTTGTCCTACAACAATTTATCTGGAATGATACCCTCAGGCCGCCAACTT
GACACCCTCAGTGCAAATGATCCATCACTAATGTATATTGGAAATGAAGGACTTTGTGGACCTCCTCTTCAAAAGAACTG
TTCAAGAAATTATACATTCATCCACAGCAGCAAGCAAGAATTCAAACCGATGACATTTTATTTTGGTTTCGGTATAGGAC
TTGTGGTGGGGATCTGGGTGGTATTTTGTGTCCTGCTGTTCAACAAGATATGGAGGATTGCTTATTTCCGGCTCTTTGAC
AAGCTGTATGATAGAGTTTACGTATTCTTGGTTGGCGGCACCCGAATGAGAAAAGAGGAGGCTTTATCGATCGCGGGACA
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28234.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis