Browse Element(s) Details


OsAffx.28233.1.S1_at

Description tigr:9635.m00145
TID=OsAffx.28233.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0239011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02340Os.12409.1.S1_at1/117+795871..797021expressed protein
LOC_Os07g02350Os.1955.1.S1_at11/117+797805..803486Casein kinase II, alpha chain, putative, expressed
LOC_Os07g02360Os.36023.1.S1_at11/117+807996..810814expressed protein
LOC_Os07g02370OsAffx.8838.1.S1_at11/117+813026..813869hypothetical protein
LOC_Os07g02380OsAffx.5182.1.S1_at11/117+816718..817085hypothetical protein
LOC_Os07g02390OsAffx.28233.1.S1_at11/117+817508..820435hypothetical protein
LOC_Os07g02400OsAffx.5183.1.S1_at11/117+820767..821977hypothetical protein
LOC_Os07g02400OsAffx.5183.1.S1_x_at11/117+820767..821977hypothetical protein
LOC_Os07g02410OsAffx.25903.2.S1_at10/117+824492..826048transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g02420OsAffx.16046.1.S1_at11/117+829996..831333hypothetical protein
LOC_Os07g02430Os.28541.1.S1_at11/117+832612..834027expressed protein
LOC_Os07g02430OsAffx.29773.1.S1_s_at1/117+832612..834027expressed protein
LOC_Os07g02440Os.36995.1.S1_at11/117+836369..839617Peroxidase 50 precursor, putative, expressed
LOC_Os07g02450OsAffx.28234.1.S1_at10/117+840165..842998Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28233.1.S1_at--272--9911Chr07:819186..819210 (25 bp)
TACTGAGGTGTTGCGTGGAATCCAA
LOC_Os07g02390
OsAffx.28233.1.S1_at--272--8211Chr07:819170..819194 (25 bp)
GGAATCCAAATTGCACAGCTACAAG
LOC_Os07g02390
OsAffx.28233.1.S1_at--874--3391Chr07:819155..819179 (25 bp)
CAGCTACAAGGCGACTATGGAATAT
LOC_Os07g02390
OsAffx.28233.1.S1_at--1115--8371Chr07:819146..819170 (25 bp)
GGCGACTATGGAATATGCTGATGAA
LOC_Os07g02390
OsAffx.28233.1.S1_at--98--9131Chr07:819131..819155 (25 bp)
TGCTGATGAATTTAACGGCAGTCTA
LOC_Os07g02390
OsAffx.28233.1.S1_at--469--9011Chr07:817592..817616 (25 bp)
TGCAATGTTCGGCATGACCGCGCTC
LOC_Os07g02390
OsAffx.28233.1.S1_at--113--4931Chr07:817581..817605 (25 bp)
GCATGACCGCGCTCTCCGTTTTGTG
LOC_Os07g02390
OsAffx.28233.1.S1_at--733--3711Chr07:817570..817594 (25 bp)
CTCTCCGTTTTGTGCCCTTTTGTTG
LOC_Os07g02390
OsAffx.28233.1.S1_at--930--7271Chr07:817559..817583 (25 bp)
GTGCCCTTTTGTTGGACTAGTCAGT
LOC_Os07g02390
OsAffx.28233.1.S1_at--479--8131Chr07:817546..817570 (25 bp)
GGACTAGTCAGTGGATTATGGGCAT
LOC_Os07g02390
OsAffx.28233.1.S1_at--720--8572Chr07:817535..817559 (25 bp)
TGGATTATGGGCATCCTCGATTGCC
LOC_Os07g02390
Target Sequence 
TACTGAGGTGTTGCGTGGAATCCAAATTGCACAGCTACAAGGCGACTATGGAATATGCTGATGAATTTAACGGCAGTCTA
NNNCGTGCAATGTTCGGCATGACCGCGCTCTCCGTTTTGTGCCCTTTTGTTGGACTAGTCAGTGGATTATGGGCATCCTC
GATTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28233.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis