Browse Element(s) Details


Os.36995.1.S1_at

Description gb:AK061511.1
DB_XREF= gi:32971529
TID=Os.36995.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36995 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peroxidase (OJ1138_B05.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-309-G05, full insert sequence.
FL= gb:AK061511.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0244011/11Peroxidase 50 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02370OsAffx.8838.1.S1_at11/117+813026..813869hypothetical protein
LOC_Os07g02380OsAffx.5182.1.S1_at11/117+816718..817085hypothetical protein
LOC_Os07g02390OsAffx.28233.1.S1_at11/117+817508..820435hypothetical protein
LOC_Os07g02400OsAffx.5183.1.S1_at11/117+820767..821977hypothetical protein
LOC_Os07g02400OsAffx.5183.1.S1_x_at11/117+820767..821977hypothetical protein
LOC_Os07g02410OsAffx.25903.2.S1_at10/117+824492..826048transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g02420OsAffx.16046.1.S1_at11/117+829996..831333hypothetical protein
LOC_Os07g02430Os.28541.1.S1_at11/117+832612..834027expressed protein
LOC_Os07g02430OsAffx.29773.1.S1_s_at1/117+832612..834027expressed protein
LOC_Os07g02440Os.36995.1.S1_at11/117+836369..839617Peroxidase 50 precursor, putative, expressed
LOC_Os07g02450OsAffx.28234.1.S1_at10/117+840165..842998Leucine Rich Repeat family protein, expressed
LOC_Os07g02460Os.30866.1.S1_at11/117+847265..848039expressed protein
LOC_Os07g02470OsAffx.16047.1.S1_x_at11/117+850804..853321hypothetical protein
LOC_Os07g02470OsAffx.16047.2.S1_at11/117+850804..853321hypothetical protein
LOC_Os07g02480Os.40486.1.S1_at1/117+856026..858194hypothetical protein
LOC_Os07g02490OsAffx.15220.1.S1_s_at11/117+863342..869930retrotransposon protein, putative, unclassified
LOC_Os07g02490OsAffx.15220.2.S1_s_at8/117+863342..869930retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36995.1.S1_at--816--491Chr07:839053..839077 (25 bp)
ATCGTGGATTCTTGGGCCCAGAGCA
LOC_Os07g02440
Os.36995.1.S1_at--345--3651Chr07:839097..839121 (25 bp)
CTTCGTCACGGCTATGACCAAGTTG
LOC_Os07g02440
Os.36995.1.S1_at--1011--7691Chr07:839143..839167 (25 bp)
GGGTCGCAAGGCAACATTCGTCGCA
LOC_Os07g02440
Os.36995.1.S1_at--249--111Chr07:839158..839182 (25 bp)
ATTCGTCGCAATTGTGCAGTGCTCA
LOC_Os07g02440
Os.36995.1.S1_at--872--3491Chr07:839209..839233 (25 bp)
CATGGTTGTTCTTACACTGAGCTTA
LOC_Os07g02440
Os.36995.1.S1_at--789--10331Chr07:839355..839379 (25 bp)
TTTAATGCTATGATACCTCGGTGTA
LOC_Os07g02440
Os.36995.1.S1_at--192--2511Chr07:839394..839418 (25 bp)
AACATCATCTCCACTTGGTGGTCGA
LOC_Os07g02440
Os.36995.1.S1_at--452--8451Chr07:839427..839451 (25 bp)
GGCCACTGGCCAACATATATGAATG
LOC_Os07g02440
Os.36995.1.S1_at--114--7371Chr07:839479..839503 (25 bp)
GTGAAACATCACATCGTTGCCAATG
LOC_Os07g02440
Os.36995.1.S1_at--574--2991Chr07:839500..839524 (25 bp)
AATGTTGCCACGTACCAAGGTCATA
LOC_Os07g02440
Os.36995.1.S1_at--860--1631Chr07:839568..839592 (25 bp)
AGCGGGACGTGATCTGTATGCGTAC
LOC_Os07g02440
Target Sequence 
ATCGTGGATTCTTGGGCCCAGAGCAGCGCCGCCTTCAACCAGGCCTTCGTCACGGCTATGACCAAGTTGGGCCGGGTTGG
GGTCAAGACCGGGTCGCAAGGCAACATTCGTCGCAATTGTGCAGTGCTCAATTAATTATTAACTGATGATCATCTACATG
GTTGTTCTTACACTGAGCTTAATTAATCCAGTTTTCAAATTATTGCTTTCTTTTGCACAAATGTAAAGGGAAAACATAAG
CAAAATTCAAGCCATATATAGATGCATGTAAACTACAATCAAAATGGTTGGTCATAAAGTTCTTTAATGCTATGATACCT
CGGTGTAGTGATGAACTGATGAACATCATCTCCACTTGGTGGTCGAAGCTAAGTGGCCACTGGCCAACATATATGAATGG
CGTGTATTTTTTTTTTTCAGCTAGAAAGTGAAACATCACATCGTTGCCAATGTTGCCACGTACCAAGGTCATATGGTTGT
ACGTGAAAGTGTCATTGATCAGATGGCACTAAAACAAGCGGGACGTGATCTGTATGCGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis