Browse Element(s) Details


Os.28541.1.S1_at

Description gb:AK111404.1
DB_XREF= gi:32996613
TID=Os.28541.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.28541 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (OJ1138_B05.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-E06, full insert sequence.
FL= gb:AK111404.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0243011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02360Os.36023.1.S1_at11/117+807996..810814expressed protein
LOC_Os07g02370OsAffx.8838.1.S1_at11/117+813026..813869hypothetical protein
LOC_Os07g02380OsAffx.5182.1.S1_at11/117+816718..817085hypothetical protein
LOC_Os07g02390OsAffx.28233.1.S1_at11/117+817508..820435hypothetical protein
LOC_Os07g02400OsAffx.5183.1.S1_at11/117+820767..821977hypothetical protein
LOC_Os07g02400OsAffx.5183.1.S1_x_at11/117+820767..821977hypothetical protein
LOC_Os07g02410OsAffx.25903.2.S1_at10/117+824492..826048transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g02420OsAffx.16046.1.S1_at11/117+829996..831333hypothetical protein
LOC_Os07g02430Os.28541.1.S1_at11/117+832612..834027expressed protein
LOC_Os07g02430OsAffx.29773.1.S1_s_at1/117+832612..834027expressed protein
LOC_Os07g02440Os.36995.1.S1_at11/117+836369..839617Peroxidase 50 precursor, putative, expressed
LOC_Os07g02450OsAffx.28234.1.S1_at10/117+840165..842998Leucine Rich Repeat family protein, expressed
LOC_Os07g02460Os.30866.1.S1_at11/117+847265..848039expressed protein
LOC_Os07g02470OsAffx.16047.1.S1_x_at11/117+850804..853321hypothetical protein
LOC_Os07g02470OsAffx.16047.2.S1_at11/117+850804..853321hypothetical protein
LOC_Os07g02480Os.40486.1.S1_at1/117+856026..858194hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28541.1.S1_at--1034--7191Chr07:833173..833197 (25 bp)
GTCGTCCTCACAGCAAGACATAAGT
LOC_Os07g02430
Os.28541.1.S1_at--1017--2831Chr07:833152..833176 (25 bp)
AAGTCAATTGGCAACCTCTCAAATG
LOC_Os07g02430
Os.28541.1.S1_at--729--8591Chr07:833107..833131 (25 bp)
TGGTCTATGGTTTGGCCCTCTCTTT
LOC_Os07g02430
Os.28541.1.S1_at--487--1411Chr07:833068..833092 (25 bp)
AGAAACCGCGTATAGTTTGTCATTC
LOC_Os07g02430
Os.28541.1.S1_at--975--4911Chr07:832957..832981 (25 bp)
GCTTCGCTGAATCCGGTGATGCTCG
LOC_Os07g02430
Os.28541.1.S1_at--70--7751Chr07:832847..832871 (25 bp)
GGTGTGCAATTCAACTGAGGCCCAA
LOC_Os07g02430
Os.28541.1.S1_at--1093--10492Chr09:22814435..22814455 (21 bp)
TTAAGACGTCGTGGCTCTACAATCG
NONE
Os.28541.1.S1_at--1042--8271Chr07:832714..832738 (25 bp)
GGCTTCCATAGTTTGGTTAATCCTC
LOC_Os07g02430
Os.28541.1.S1_at--257--8951Chr07:832697..832721 (25 bp)
TAATCCTCTTTCTTTAGGGTTGTCT
LOC_Os07g02430
Os.28541.1.S1_at--311--1071Chr07:832682..832706 (25 bp)
AGGGTTGTCTCTAATGCTTTCAGCT
LOC_Os07g02430
Os.28541.1.S1_at--887--632Chr10:17750697..17750716 (20 bp)
ATGCTTTCAGCTACTATCCTTTGTT
NONE
Target Sequence 
GTCGTCCTCACAGCAAGACATAAGTCAATTGGCAACCTCTCAAATGCCCCATTGTTGATGGTTGGCTGGTCTATGGTTTG
GCCCTCTCTTTTGTTTCCTAGCAGCAGAAACCGCGTATAGTTTGTCATTCGGGTTGAGCTCGGANACCCCTGTGCAATTT
TCATTATCAGGGTTGTTGTTAGAGTTCCTCAGATTCAATGACGAATCCCGTGGGGATGCTTCGCTGAATCCGGTGATGCT
CGCACCAAAATCTATGGCTCAACAATTATCCTCGATCTTGTGCCGTTCCCGTGAAGGCAACCAAAGGGGATCAACGGTTT
GTCAAGCGGTGTGCAATTCAACTGAGGCCCAAGGTAGCAGTCGTCGCGGTTTTAAGACGTCGTGGCTCTACAATCGTCAC
GGCANCAACGCAGCTCCCTATCGGCTTGCTCCTTTTTCTGCTATTTTGTTACATCTGGAAGGCTTCCATAGTTTGGTTAA
TCCTCTTTCTTTAGGGTTGTCTCTAATGCTTTCAGCTACTATCCTTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28541.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis