Browse Element(s) Details


OsAffx.25903.2.S1_at

Description gb:NM_194138.1
DB_XREF= gi:34915313
GEN=OJ1138_B05.10
TID=OsAffx.25903.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GlimmerM etc. (OJ1138_B05.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0241010/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02350Os.1955.1.S1_at11/117+797805..803486Casein kinase II, alpha chain, putative, expressed
LOC_Os07g02360Os.36023.1.S1_at11/117+807996..810814expressed protein
LOC_Os07g02370OsAffx.8838.1.S1_at11/117+813026..813869hypothetical protein
LOC_Os07g02380OsAffx.5182.1.S1_at11/117+816718..817085hypothetical protein
LOC_Os07g02390OsAffx.28233.1.S1_at11/117+817508..820435hypothetical protein
LOC_Os07g02400OsAffx.5183.1.S1_at11/117+820767..821977hypothetical protein
LOC_Os07g02400OsAffx.5183.1.S1_x_at11/117+820767..821977hypothetical protein
LOC_Os07g02410OsAffx.25903.2.S1_at10/117+824492..826048transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g02420OsAffx.16046.1.S1_at11/117+829996..831333hypothetical protein
LOC_Os07g02430Os.28541.1.S1_at11/117+832612..834027expressed protein
LOC_Os07g02430OsAffx.29773.1.S1_s_at1/117+832612..834027expressed protein
LOC_Os07g02440Os.36995.1.S1_at11/117+836369..839617Peroxidase 50 precursor, putative, expressed
LOC_Os07g02450OsAffx.28234.1.S1_at10/117+840165..842998Leucine Rich Repeat family protein, expressed
LOC_Os07g02460Os.30866.1.S1_at11/117+847265..848039expressed protein
LOC_Os07g02470OsAffx.16047.1.S1_x_at11/117+850804..853321hypothetical protein
LOC_Os07g02470OsAffx.16047.2.S1_at11/117+850804..853321hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25903.2.S1_at--495--8411NONE
GGCCGGCCGGTTGATAAGTGTCTCA
NONE
OsAffx.25903.2.S1_at--527--9431Chr07:825666..825690 (25 bp)
TCGGAAGGCTGGAGGAACATCTTAA
LOC_Os07g02410
OsAffx.25903.2.S1_at--699--8011Chr07:825676..825856 (25 bp)
GGAGGAACATCTTAAGAGCATCTAT
LOC_Os07g02410
OsAffx.25903.2.S1_at--142--1371Chr07:825848..825870 (23 bp)
AGAGCATCTATGACGCACGTGTGGA
LOC_Os07g02410
OsAffx.25903.2.S1_at--770--6151Chr07:825881..825905 (25 bp)
GATGGTTTTCGGTGGTCTCGCGACA
LOC_Os07g02410
OsAffx.25903.2.S1_at--1030--7151Chr07:825895..825919 (25 bp)
GTCTCGCGACATGTTTTTAGCCATT
LOC_Os07g02410
OsAffx.25903.2.S1_at--620--8771Chr07:825906..825930 (25 bp)
TGTTTTTAGCCATTTCATCGAGCAT
LOC_Os07g02410
OsAffx.25903.2.S1_at--642--9611Chr07:825920..825944 (25 bp)
TCATCGAGCATCTTTATTGGTGCCA
LOC_Os07g02410
OsAffx.25903.2.S1_at--410--7691Chr07:825949..825973 (25 bp)
GGGTGCATATGGACCGTACCGGAAA
LOC_Os07g02410
OsAffx.25903.2.S1_at--836--4591Chr07:825974..825998 (25 bp)
GCGTTCTTTCGTTTGGTTGGTATTG
LOC_Os07g02410
OsAffx.25903.2.S1_at--1123--10851Chr07:825990..826014 (25 bp)
TTGGTATTGGCAACCGCCCAGATGA
LOC_Os07g02410
Target Sequence 
GGCCGGCCGGTTGATAAGTGTCTCAATGATCTAAAAAGAATAGATGTCGGAAGGCTGGAGGAACATCTTAAGAGCATCTA
TGACGCACGTGTGGAGATAGGGCTTGATGGTTTTCGGTGGTCTCGCGACATGTTTTTAGCCATTTCATCGAGCATCTTTA
TTGGTGCCATGTGGGGTGCATATGGACCGTACCGGAAAGCGTTCTTTCGTTTGGTTGGTATTGGCAACCGCCCAGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25903.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis