Browse Element(s) Details


Os.1955.1.S1_at

Description gb:AK070271.1
DB_XREF= gi:32980295
TID=Os.1955.1
CNT=33
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.1955 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) casein kinase II alpha subunit (OJ1513_F02.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023047E06, full insert sequence.
FL= gb:AK070271.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0235011/11Casein kinase II, alpha chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02310NANA7+771120..772854retrotransposon protein, putative, unclassified
LOC_Os07g02319NANA7+777018..777299NA
LOC_Os07g02330Os.38299.1.S1_at11/117+778683..780249Protein phosphatase 2C containing protein, expressed
LOC_Os07g02340Os.12409.1.S1_at1/117+795871..797021expressed protein
LOC_Os07g02350Os.1955.1.S1_at11/117+797805..803486Casein kinase II, alpha chain, putative, expressed
LOC_Os07g02360Os.36023.1.S1_at11/117+807996..810814expressed protein
LOC_Os07g02370OsAffx.8838.1.S1_at11/117+813026..813869hypothetical protein
LOC_Os07g02380OsAffx.5182.1.S1_at11/117+816718..817085hypothetical protein
LOC_Os07g02390OsAffx.28233.1.S1_at11/117+817508..820435hypothetical protein
LOC_Os07g02400OsAffx.5183.1.S1_at11/117+820767..821977hypothetical protein
LOC_Os07g02400OsAffx.5183.1.S1_x_at11/117+820767..821977hypothetical protein
LOC_Os07g02410OsAffx.25903.2.S1_at10/117+824492..826048transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0004680molecular_functioncasein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1955.1.S1_at--1149--7751Chr07:798792..798816 (25 bp)
GGTACTTGGGACAGACAGCCTGAAT
LOC_Os07g02350
Os.1955.1.S1_at--928--1171Chr07:798754..798778 (25 bp)
AGTACCGTATTGAGCTTGACCCACA
LOC_Os07g02350
Os.1955.1.S1_at--886--5411Chr07:798637..798749 (25 bp)
GAAGCCCTCGTTGGAAGGCACAGCA
LOC_Os07g02350
Os.1955.1.S1_at--872--2491Chr07:798580..798600 (21 bp)
AACATCTAGTATCCCCAGAGGCCAT
LOC_Os07g02350
Os.1955.1.S1_at--972--1311Chr07:798465..798487 (23 bp)
AGAGGCCATCGATTTCCTTGACAAG
LOC_Os07g02350
Os.1955.1.S1_at--697--5611Chr07:798446..798470 (25 bp)
GACAAGCTTCTTCGCTATGATCACC
LOC_Os07g02350
Os.1955.1.S1_at--1152--7931Chr07:798420..798444 (25 bp)
GGATAGACTTACTGCACGTGAAGCT
LOC_Os07g02350
Os.1955.1.S1_at--811--9891Chr07:798208..798232 (25 bp)
TACTTTCTCCAAGTGAGGGCTGCGG
LOC_Os07g02350
Os.1955.1.S1_at--505--6931Chr07:798177..798201 (25 bp)
GTAGGCCTCGTGCACAATAGACAAA
LOC_Os07g02350
Os.1955.1.S1_at--98--5451Chr07:798151..798175 (25 bp)
GAACGGGACTATTGCTGACTGTCGA
LOC_Os07g02350
Os.1955.1.S1_at--122--8091Chr07:798112..798136 (25 bp)
GGAGCTGCACCGTATTAGTGACTTA
LOC_Os07g02350
Target Sequence 
GGTACTTGGGACAGACAGCCTGAATTCATACTTGAACAAGTACCGTATTGAGCTTGACCCACAGCTTGAAGCCCTCGTTG
GAAGGCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGGCCATCGATTTC
CTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATGGCACACCCATACTTTCTCCAAGT
GAGGGCTGCGGAGAACAGTAGGCCTCGTGCACAATAGACAAAAGAACGGGACTATTGCTGACTGTCGATTAGCAGCAGTC
ATGGAGCTGCACCGTATTAGTGACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1955.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis