Browse Element(s) Details


Os.36023.1.S1_at

Description gb:AK064629.1
DB_XREF= gi:32974647
TID=Os.36023.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36023 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (OJ1138_B05.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-F12, full insert sequence.
FL= gb:AK064629.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0236011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02340Os.12409.1.S1_at1/117+795871..797021expressed protein
LOC_Os07g02350Os.1955.1.S1_at11/117+797805..803486Casein kinase II, alpha chain, putative, expressed
LOC_Os07g02360Os.36023.1.S1_at11/117+807996..810814expressed protein
LOC_Os07g02370OsAffx.8838.1.S1_at11/117+813026..813869hypothetical protein
LOC_Os07g02380OsAffx.5182.1.S1_at11/117+816718..817085hypothetical protein
LOC_Os07g02390OsAffx.28233.1.S1_at11/117+817508..820435hypothetical protein
LOC_Os07g02400OsAffx.5183.1.S1_at11/117+820767..821977hypothetical protein
LOC_Os07g02400OsAffx.5183.1.S1_x_at11/117+820767..821977hypothetical protein
LOC_Os07g02410OsAffx.25903.2.S1_at10/117+824492..826048transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g02420OsAffx.16046.1.S1_at11/117+829996..831333hypothetical protein
LOC_Os07g02430Os.28541.1.S1_at11/117+832612..834027expressed protein
LOC_Os07g02430OsAffx.29773.1.S1_s_at1/117+832612..834027expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36023.1.S1_at--566--1171Chr07:809981..810005 (25 bp)
AGTAAGGCGCCTTATCAATTCGCTT
LOC_Os07g02360
Os.36023.1.S1_at--384--371Chr07:809994..810018 (25 bp)
ATCAATTCGCTTGTGAGGTCGCTCG
LOC_Os07g02360
Os.36023.1.S1_at--40--1031Chr07:810009..810033 (25 bp)
AGGTCGCTCGGTGATGTTCCAAAAC
LOC_Os07g02360
Os.36023.1.S1_at--752--7671Chr07:810038..810062 (25 bp)
GGGTTTCACTAAGACATTTTCTCAA
LOC_Os07g02360
Os.36023.1.S1_at--300--9711Chr07:810121..810145 (25 bp)
TCAAAGTGCCACTACGAAGGCTCAT
LOC_Os07g02360
Os.36023.1.S1_at--991--5291Chr07:810136..810160 (25 bp)
GAAGGCTCATCCTCAGGACTTTGGA
LOC_Os07g02360
Os.36023.1.S1_at--525--651Chr07:810430..810454 (25 bp)
ATGCACATGCCAATCCTAATTTCTG
LOC_Os07g02360
Os.36023.1.S1_at--437--10031Chr07:810562..810586 (25 bp)
TAGAGCATTCGGACTAAGCCTCCTC
LOC_Os07g02360
Os.36023.1.S1_at--1158--9652Chr07:810588..810612 (25 bp)
TCAGCTTCTTCAGCTTCGAAGTTGG
LOC_Os07g02360
Os.36023.1.S1_at--523--3011Chr07:810671..810695 (25 bp)
AATGCATGCATGTAGGGATCAGACC
LOC_Os07g02360
Os.36023.1.S1_at--655--3371Chr07:810738..810762 (25 bp)
CACCTTGGTGTCAATGATTTGCCCC
LOC_Os07g02360
Target Sequence 
AGTAAGGCGCCTTATCAATTCGCTTGTGAGGTCGCTCGGTGATGTTCCAAAACAAAAGGGTTTCACTAAGACATTTTCTC
AAGAATTTGGGATGGTTGTGAAGGAACTAGAAAAGGATATGAATATGAGTTTTAAATCATTCAAAGTGCCACTACGAAGG
CTCATCCTCAGGACTTTGGACAAGTATCAGCAGCAGGGAAGTGATGCTTTACTGAAGAATTCTCTGGAATCCAAAGTGCA
CAGCAGCCACTGGGGAGATGCACATGCCAATCCTAATTTCTGGACTAGAGCATTCGGACTAAGCCTCCTCCTCAGCTTCT
TCAGCTTCGAAGTTGGACAACAATATGAGATTCTCAATGGAGAGGGAGAGCTTCCAAAGTGATGATGTCAATTTAATGCA
TGCATGTAGGGATCAGACCAGTTGGTGTTTTGTAATACTAATCTATACCTAGAGGCATTGTCACCTTGGTGTCAATGATT
TGCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36023.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis