Browse Element(s) Details


Os.38299.1.S1_at

Description gb:AK102668.1
DB_XREF= gi:32987877
TID=Os.38299.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38299 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) protein phosphatase 2C-like (OJ1513_F02.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033101O03, full insert sequence.
FL= gb:AK102668.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0233011/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02300Os.27537.1.S1_at11/117+751972..761671TPR Domain containing protein, expressed
LOC_Os07g02300OsAffx.31868.1.S1_at2/117+751972..761671TPR Domain containing protein, expressed
LOC_Os07g02310NANA7+771120..772854retrotransposon protein, putative, unclassified
LOC_Os07g02319NANA7+777018..777299NA
LOC_Os07g02330Os.38299.1.S1_at11/117+778683..780249Protein phosphatase 2C containing protein, expressed
LOC_Os07g02340Os.12409.1.S1_at1/117+795871..797021expressed protein
LOC_Os07g02350Os.1955.1.S1_at11/117+797805..803486Casein kinase II, alpha chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38299.1.S1_at--710--9371Chr07:779184..779208 (25 bp)
TCGACCTGTTCGTCGTGTTCGCCTC
LOC_Os07g02330
Os.38299.1.S1_at--344--9291Chr07:779161..779185 (25 bp)
TCCGACGGCCTATGGGAGCACCTCT
LOC_Os07g02330
Os.38299.1.S1_at--625--3971Chr07:779124..779148 (25 bp)
CGGTGCAGCTGGTGTCCAAGAGCTC
LOC_Os07g02330
Os.38299.1.S1_at--346--5771Chr07:778861..778885 (25 bp)
GACGTCTACAGCTTGTACAACTCCA
LOC_Os07g02330
Os.38299.1.S1_at--636--3251Chr07:778844..778868 (25 bp)
CAACTCCACCGCTTGAACAACAATA
LOC_Os07g02330
Os.38299.1.S1_at--351--7671Chr07:778807..778831 (25 bp)
GGGATTTCCCATGTCATGTTGCTTA
LOC_Os07g02330
Os.38299.1.S1_at--274--7131Chr07:778795..778819 (25 bp)
GTCATGTTGCTTACAACTACATTTT
LOC_Os07g02330
Os.38299.1.S1_at--12--291Chr07:778752..778776 (25 bp)
ATAGGATGTCGAGTTAGGTTAACAC
LOC_Os07g02330
Os.38299.1.S1_at--478--7891Chr07:778736..778760 (25 bp)
GGTTAACACTTAGGATCTGTTTGTC
LOC_Os07g02330
Os.38299.1.S1_at--477--7971Chr07:778724..778748 (25 bp)
GGATCTGTTTGTCATAGTTTAACTC
LOC_Os07g02330
Os.38299.1.S1_at--445--10031Chr07:778710..778734 (25 bp)
TAGTTTAACTCTATCTTTTTTGAAG
LOC_Os07g02330
Target Sequence 
TCGACCTGTTCGTCGTGTTCGCCTCCGACGGCCTATGGGAGCACCTCTCCGACGAGGCGGCGGTGCAGCTGGTGTCCAAG
AGCTCGACGAGGAGAGGCGTGGCGGCGAGGCTGGTGCAGGCAGCGCTCGGGGAGGCGGCGAGGAAGCGGGAGGTGAGGCG
CGGCGACCTGCGGCGGATCGAGCGAGGGGTGAGGCGCCACTTCCACGACGACATCACCGCCGTCGTCGTCTTCCTCGACC
TCGACGACGACGGCGGCCGCCGCGCGCGCCGCCGTGGCAGGGTCGTCGACTCCAGCAGCAGCAGNNGCNGCAACACGCCG
CTCGACGTCTACAGCTTGTACAACTCCACCGCTTGAACAACAATATATTTAATATTTGGGATTTCCCATGTCATGTTGCT
TACAACTACATTTTTTTTAAACATTTTTACAAATAGGATGTCGAGTTAGGTTAACACTTAGGATCTGTTTGTCATAGTTT
AACTCTATCTTTTTTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38299.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis