Browse Element(s) Details


OsAffx.617.1.A1_at

Description tigr:9635.m01067
TID=OsAffx.617.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1095011/11hypothetical protein
LOC_Os03g4413011/11expressed protein
LOC_Os10g3303011/11hypothetical protein
LOC_Os07g0250011/11hypothetical protein
LOC_Os09g035704/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10910Os.10286.2.A1_at11/117+5970401..5975221Exo70 exocyst complex subunit family protein, expressed
LOC_Os07g10910Os.10286.1.S1_x_at11/117+5970401..5975221Exo70 exocyst complex subunit family protein, expressed
LOC_Os07g10920Os.38820.1.S1_at11/117+5971908..5977368expressed protein
LOC_Os07g10920Os.53060.1.S1_at11/117+5971908..5977368expressed protein
LOC_Os07g10930NANA7+5984759..5985181hypothetical protein
LOC_Os07g10940OsAffx.28398.1.S1_at11/117+5986157..5995495Exo70 exocyst complex subunit family protein
LOC_Os07g10940Os.54910.1.S1_at1/117+5986157..5995495Exo70 exocyst complex subunit family protein
LOC_Os07g10950OsAffx.617.1.A1_at11/117+5998924..6002836hypothetical protein
LOC_Os07g10950OsAffx.617.1.A1_x_at11/117+5998924..6002836hypothetical protein
LOC_Os07g10950OsAffx.27854.1.S1_at1/117+5998924..6002836hypothetical protein
LOC_Os07g10960OsAffx.5289.1.S1_at11/117+6013523..6015699expressed protein
LOC_Os07g10970OsAffx.5290.1.S1_at11/117+6017150..6019452expressed protein
LOC_Os07g10979NANA7+6026296..6026941NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.617.1.A1_at--172--7375Chr07:871790..871984 (25 bp)
GTGACAGAATGATGGCAAGTTATGC
LOC_Os07g02500
OsAffx.617.1.A1_at--915--9115Chr07:871982..872006 (25 bp)
TGCTGATCGTGAGGAGAATATAATT
LOC_Os07g02500
OsAffx.617.1.A1_at--1077--5954Chr07:871995..872019 (25 bp)
GAGAATATAATTGTGCAGGTCGTTA
LOC_Os07g02500
OsAffx.617.1.A1_at--883--1454Chr07:871996..872020 (25 bp)
AGAATATAATTGTGCAGGTCGTTAT
LOC_Os07g02500
OsAffx.617.1.A1_at--341--3114Chr07:871998..872022 (25 bp)
AATATAATTGTGCAGGTCGTTATGC
LOC_Os07g02500
OsAffx.617.1.A1_at--307--174Chr07:871999..872023 (25 bp)
ATATAATTGTGCAGGTCGTTATGCT
LOC_Os07g02500
OsAffx.617.1.A1_at--695--10174Chr07:872000..872024 (25 bp)
TATAATTGTGCAGGTCGTTATGCTG
LOC_Os07g02500
OsAffx.617.1.A1_at--1145--354Chr07:872001..872025 (25 bp)
ATAATTGTGCAGGTCGTTATGCTGA
LOC_Os07g02500
OsAffx.617.1.A1_at--150--9754Chr07:872002..872026 (25 bp)
TAATTGTGCAGGTCGTTATGCTGAA
LOC_Os07g02500
OsAffx.617.1.A1_at--236--8075Chr07:872028..872225 (25 bp)
GGAGAACTCGCCATGCATTCACCTA
LOC_Os07g02500
OsAffx.617.1.A1_at--348--5975Chr07:872029..872226 (25 bp)
GAGAACTCGCCATGCATTCACCTAC
LOC_Os07g02500
Target Sequence 
GTGACAGAATGATGGCAAGTTATGCTGATCGTGAGGAGAATATAATTGTGCAGGTCGTTATGCTGAAGGGAGAACTCGCC
ATGCATTCACCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.617.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis