Browse Element(s) Details


Os.54910.1.S1_at

Description gb:AK107081.1
DB_XREF= gi:32992290
TID=Os.54910.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54910 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-F11, full insert sequence.
FL= gb:AK107081.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3552411/11expressed protein
LOC_Os07g109401/11Exo70 exocyst complex subunit family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35490OsAffx.27950.1.S1_at10/116+20687531..20690748Peroxidase 52 precursor, putative
LOC_Os06g35500NANA6+20698118..20698444hypothetical protein
LOC_Os06g35510NANA6+20701536..20702393transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g35520Os.11546.1.S1_at11/116+20704373..20706000Peroxidase 52 precursor, putative, expressed
LOC_Os06g35524Os.54910.1.S1_at11/116+20711611..20713603expressed protein
LOC_Os06g35530Os.15.1.S1_at11/116+20716775..20723726Shaggy-related protein kinase eta, putative, expressed
LOC_Os06g35540Os.4772.1.S1_at11/116+20726251..20730771Aspartate aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os06g35550OsAffx.19542.3.S1_x_at3/116+20735010..20743699retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g35550OsAffx.9949.1.S1_at1/116+20735010..20743699retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54910.1.S1_at--644--3971Chr06:20712042..20712066 (25 bp)
CGGTGCTAGCTCTTGAGTGGAAGAT
LOC_Os06g35524
Os.54910.1.S1_at--257--8311Chr06:20711903..20711927 (25 bp)
GGCGGGCCTGTTAAGAGCCCCACGT
LOC_Os06g35524
Os.54910.1.S1_at--501--1351Chr06:20711890..20711914 (25 bp)
AGAGCCCCACGTCCAAAAATAGAGT
LOC_Os06g35524
Os.54910.1.S1_at--723--6071Chr06:20711869..20711893 (25 bp)
GAGTATTTTTCCGTGTGGGCATATT
LOC_Os06g35524
Os.54910.1.S1_at--72--6214Chr12:24852940..24852964 (25 bp)
GAGGCCCGTCTACGAAAATTGATTT
NONE
Os.54910.1.S1_at--813--10471Chr06:20711817..20711841 (25 bp)
TTACGTGCGGTGAGCTGCACACAAA
LOC_Os06g35524
Os.54910.1.S1_at--914--2271Chr06:20711793..20711817 (25 bp)
AAATGGAGGACGATTTTCGCAGACG
LOC_Os06g35524
Os.54910.1.S1_at--1067--152Chr09:10088547..10088704 (25 bp)
ATTTTCGCAGACGTGACCAGTTATG
NONE
Os.54910.1.S1_at--619--7374Chr08:17233281..17233303 (23 bp)
GTGACCAGTTATGGTCCGTCTGCAA
NONE
Os.54910.1.S1_at--685--85911Chr11:14279660..14279679 (20 bp)
TGGTCCGTCTGCAATCTAAATGAGT
NONE
Os.54910.1.S1_at--892--4371Chr06:20711618..20711642 (25 bp)
CCAAGCAACCTATTTGGCCGTTGAA
LOC_Os06g35524
Target Sequence 
CGGTGCTAGCTCTTGAGTGGAAGATAAGGGGGAATACTGAGAGGAGGAGAGGAAAGTGAGGAGAAGATAAGGGGGAGAGA
GGAGAAGTGAAACTTGAATGTTTTTTTGAACATGTTGAGAGGGAAAGAGGATTTTTCCGGGCGGGCCTGTTAAGAGCCCC
ACGTCCAAAAATAGAGTATTTTTCCGTGTGGGCATATTAAGAGGCCCGTCTACGAAAATTGATTTTTACGTGCGGTGAGC
TGCACACAAAAATGGAGGACGATTTTCGCAGACGTGACCAGTTATGGTCCGTCTGCAATCTAAATGAGTCCCTGTACAGG
AAAAATCGTTTTTTATAGTGATATTTGCAGTCAGAAATGTATTTTTTTTTCATTTTTCTTTAGCTTTTGTTGTATACTTA
AAGTACTCCTATTATAATATAACGCCAAGCAACCTATTTGGCCGTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54910.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis