Browse Element(s) Details


OsAffx.27950.1.S1_at

Description tigr:9634.m03354
TID=OsAffx.27950.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=bacterial-induced peroxidase precursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3549010/11Peroxidase 52 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35460Os.51348.1.S1_x_at1/116+20660170..20664084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35470Os.16649.1.S1_at2/116+20665507..20671621ribosomal protein L1 containing protein, expressed
LOC_Os06g35480Os.53667.1.S1_at11/116+20675209..20676669Cationic peroxidase 1 precursor, putative, expressed
LOC_Os06g35490OsAffx.27950.1.S1_at10/116+20687531..20690748Peroxidase 52 precursor, putative
LOC_Os06g35500NANA6+20698118..20698444hypothetical protein
LOC_Os06g35510NANA6+20701536..20702393transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g35520Os.11546.1.S1_at11/116+20704373..20706000Peroxidase 52 precursor, putative, expressed
LOC_Os06g35524Os.54910.1.S1_at11/116+20711611..20713603expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27950.1.S1_at--1082--9611Chr06:20689587..20689607 (21 bp)
TCAGGCTGAACTGCCGGAAGGATAT
LOC_Os06g35490
OsAffx.27950.1.S1_at--25--1991Chr06:20689459..20689598 (25 bp)
ACTGCCGGAAGGATATGACCAATTT
LOC_Os06g35490
OsAffx.27950.1.S1_at--235--8931Chr06:20689444..20689468 (25 bp)
TGACCAATTTTATTATCCTCATTTG
LOC_Os06g35490
OsAffx.27950.1.S1_at--837--10411NONE
TTATTATCCTCATTTGTGGTGCTCA
NONE
OsAffx.27950.1.S1_at--443--10251Chr06:20688811..20688832 (22 bp)
TTTGTGGTGCTCATTTTCCTCTTAA
LOC_Os06g35490
OsAffx.27950.1.S1_at--651--7311Chr06:20688805..20688829 (25 bp)
GTGCTCATTTTCCTCTTAATTTGCA
LOC_Os06g35490
OsAffx.27950.1.S1_at--33--1111Chr06:20688780..20688804 (25 bp)
AGTGTTTGGAGGGTTGCTTTTCATC
LOC_Os06g35490
OsAffx.27950.1.S1_at--363--7671Chr06:20688770..20688794 (25 bp)
GGGTTGCTTTTCATCTTACCACAAA
LOC_Os06g35490
OsAffx.27950.1.S1_at--637--2771Chr06:20687743..20687766 (24 bp)
AAGACCGATGACGTCGTCTTCACCG
LOC_Os06g35490
OsAffx.27950.1.S1_at--1041--9291Chr06:20687683..20687707 (25 bp)
TCCCGCGCTACAATGGAAGCCGAGG
LOC_Os06g35490
OsAffx.27950.1.S1_at--158--151Chr06:20687623..20687647 (25 bp)
ATTACCGCCTGTCGCGTTGCCAAGC
LOC_Os06g35490
Target Sequence 
TCAGGCTGAACTGCCGGAAGGATATGACCAATTTTATTATCCTCATTTGTGGTGCTCATTTTCCTCTTAATTTGCAAGTG
TTTGGAGGGTTGCTTTTCATCTTACCACAAAAGATGGAGAAGACCGATGACGTCGTCTTCACCGGCCACATCAAGGACGA
TGACGACATCCCGCCGCCCTCCCGCGCTACAATGGAAGCCGAGGCCGCGTCCCTCCTCGTCGCCCTCGTCTCACGTGCCA
TTACCGCCTGTCGCGTTGCCAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27950.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis