Browse Element(s) Details


Os.16649.1.S1_at

Description gb:AK067243.1
DB_XREF= gi:32977261
TID=Os.16649.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16649 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013099C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013099C01, full insert sequence.
FL= gb:AK067243.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g354702/11ribosomal protein L1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35420NANA6+20644220..20645832retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35430NANA6+20646758..20649698retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35440Os.10703.2.S1_x_at1/116+20650015..20653835retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35440Os.51348.1.S1_x_at1/116+20650015..20653835retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35450NANA6+20654817..20657113hypothetical protein
LOC_Os06g35460Os.51348.1.S1_x_at1/116+20660170..20664084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35470Os.16649.1.S1_at2/116+20665507..20671621ribosomal protein L1 containing protein, expressed
LOC_Os06g35480Os.53667.1.S1_at11/116+20675209..20676669Cationic peroxidase 1 precursor, putative, expressed
LOC_Os06g35490OsAffx.27950.1.S1_at10/116+20687531..20690748Peroxidase 52 precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16649.1.S1_at--108--9891Chr06:20670517..20670541 (25 bp)
TACTTGCCAAGCCAGTGGGATTAAA
LOC_Os06g35470
Os.16649.1.S1_at--1036--5371Chr06:20670992..20671016 (25 bp)
GAAGAAGTTCACACTGAGTAGCACA
LOC_Os06g35470
Os.16649.1.S1_at--408--7931Chr06:20672258..20672282 (25 bp)
GGATTTCCTGTAACCATACCATCGC
NONE
Os.16649.1.S1_at--544--10151Chr06:20672283..20672307 (25 bp)
TATCCGCGGCAGCTGATCATTATAA
NONE
Os.16649.1.S1_at--164--1491Chr06:20672312..20672336 (25 bp)
AGCAAGGTGCAAGCCAGCTAACGAA
NONE
Os.16649.1.S1_at--728--1811Chr06:20672352..20672376 (25 bp)
ACGAACCTTTTTGCACTAGTGAACA
NONE
Os.16649.1.S1_at--1013--5491Chr06:20672372..20672396 (25 bp)
GAACACAGCCGGCTTGCAAGTTGTG
NONE
Os.16649.1.S1_at--432--671Chr06:20672409..20672433 (25 bp)
ATGAAGCATAGAGGCCGACCGCAGT
NONE
Os.16649.1.S1_at--293--4771Chr06:20672522..20672546 (25 bp)
GCTGCTCAGCAATTATGTGACTGCG
NONE
Os.16649.1.S1_at--648--9611Chr06:20672565..20672589 (25 bp)
TCATCCACGGTGTTCTGCAATTTGT
NONE
Os.16649.1.S1_at--838--5631Chr06:20672684..20672708 (25 bp)
GACAGAATATGGCACTCGAATCGAA
NONE
Target Sequence 
TACTTGCCAAGCCAGTGGGATTAAAGAAAACTTCAAAGTATGTTGGATACGTGAAGAAGTTCACACTGAGTAGCACANAT
GGGTCCTGGATTTCCTGTAACCATACCATCGCTATCCGCGGCAGCTGATCATTATAACAATAGCAAGGTGCAAGCCAGCT
AACGAAATATAATCAAGTTAAACGAACCTTTTTGCACTAGTGAACACAGCCGGCTTGCAAGTTGTGGATGGTTTGGTGAT
GAAGCATAGAGGCCGACCGCAGTNAGATGAATGGCTGTTTTTGACACTGGGTTAATGATTGTGGACAAAAACCTTCAAGA
AACATTCGGTAGGGGATTCTTAGTTTTTTTTGCTGCTCAGCAATTATGTGACTGCGTTAAATGGNCCACCTTTGTCATCC
ACGGTGTTCTGCAATTTGTTGTAAGAAATGTAATTCTGAGTTTATTNTTNAACAAGATTGTAGTTCNAGCNTTTTGGAGA
TAATAATGGTCGAGATACCGCATNATGTGATCCGACAGAATATGGCACTCGAATCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16649.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis