Browse Element(s) Details


Os.4772.1.S1_at

Description gb:D67043.1
DB_XREF= gi:2696239
TID=Os.4772.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4772 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for aspartate aminotransferase, complete cds.
PROD=aspartate aminotransferase
FL= gb:D67043.1 gb:AK101008.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3554011/11Aspartate aminotransferase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35510NANA6+20701536..20702393transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g35520Os.11546.1.S1_at11/116+20704373..20706000Peroxidase 52 precursor, putative, expressed
LOC_Os06g35524Os.54910.1.S1_at11/116+20711611..20713603expressed protein
LOC_Os06g35530Os.15.1.S1_at11/116+20716775..20723726Shaggy-related protein kinase eta, putative, expressed
LOC_Os06g35540Os.4772.1.S1_at11/116+20726251..20730771Aspartate aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os06g35550OsAffx.19542.3.S1_x_at3/116+20735010..20743699retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g35550OsAffx.9949.1.S1_at1/116+20735010..20743699retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g35560Os.14895.1.S1_at11/116+20750065..20751958Reticuline oxidase precursor, putative, expressed
LOC_Os06g35570OsAffx.27952.1.S1_at11/116+20755221..20755825hypothetical protein
LOC_Os06g35570OsAffx.15200.2.S1_x_at1/116+20755221..20755825hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006807biological_processnitrogen compound metabolism
GO:0010150biological_processleaf senescence
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0009536cellular_componentplastid
GO:0004069molecular_functionaspartate transaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4772.1.S1_at--596--9711Chr06:20727194..20727218 (25 bp)
TCAACTATTCTTGGTGATCCGGAGT
LOC_Os06g35540
Os.4772.1.S1_at--50--1251Chr06:20726966..20726990 (25 bp)
AGTTGGGTTCACCAATGTCATGGGA
LOC_Os06g35540
Os.4772.1.S1_at--1145--8951Chr06:20726798..20726822 (25 bp)
TGACACCTGAACAAGTCGATCGCTT
LOC_Os06g35540
Os.4772.1.S1_at--412--6391Chr06:20726781..20726805 (25 bp)
GATCGCTTGACAAAAGAGTTCCATA
LOC_Os06g35540
Os.4772.1.S1_at--435--10151Chr06:20726758..20726782 (25 bp)
TATCTACATGACTCGTAACGGGCGG
LOC_Os06g35540
Os.4772.1.S1_at--915--2991Chr06:20726597..20726621 (25 bp)
AATGTTGCCTATCTGGCTAATGCTA
LOC_Os06g35540
Os.4772.1.S1_at--1043--8051Chr06:20726539..20726563 (25 bp)
GGAGACATTCCTATCATCATTTTCA
LOC_Os06g35540
Os.4772.1.S1_at--321--3551Chr06:20726525..20726549 (25 bp)
CATCATTTTCAGTACCTTTTTACCG
LOC_Os06g35540
Os.4772.1.S1_at--352--5611Chr06:20726402..20726426 (25 bp)
GACAAGACTTTTGCTGTACCAGTGA
LOC_Os06g35540
Os.4772.1.S1_at--485--5451Chr06:20726346..20726370 (25 bp)
GAACGAACGTTCTAACTGTGACAGT
LOC_Os06g35540
Os.4772.1.S1_at--387--7371Chr06:20726329..20726353 (25 bp)
GTGACAGTGTCATGCTTTGTAAAGG
LOC_Os06g35540
Target Sequence 
TCAACTATTCTTGGTGATCCGGAGTTGAAAAGTTTATGGCTGAAAGAGGTCAAGGGTATGGCTGATCGTATCATTGGAAT
GCGAACAGCACTCAAAGAGAACCTTGAAAAGTTGGGTTCACCAATGTCATGGGAACATATCACTAATCAGATTGGAATGT
TCTGCTACAGTGGTATGACACCTGAACAAGTCGATCGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGG
ATAAGCATGGCTGGAGTAACAACAGGAAATGTTGCCTATCTGGCTAATGCTATTCATGAGGTTACCAAGACAAAGTGAGA
GTGTTGGAGACATTCCTATCATCATTTTCAGTACCTTTTTACCGACCGCAAAATGGGTCAAATGGTGAAATAAAATTGTA
GTCCGATATGATGTGAAATAAAATGGCTGGTAAGCTAGAAAAGGGCAAGTTTATTTTTTGAGGACAAGACTTTTGCTGTA
CCAGTGAAAACATTTTTTAGGACAAGACTTTNACAGTTAGAACGAACGTTCTAACTGTGACAGTGTCATGCTTTGTAAAG
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4772.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis