Browse Element(s) Details


OsAffx.27952.1.S1_at

Description tigr:9634.m03364
TID=OsAffx.27952.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3557011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35540Os.4772.1.S1_at11/116+20726251..20730771Aspartate aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os06g35550OsAffx.19542.3.S1_x_at3/116+20735010..20743699retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g35550OsAffx.9949.1.S1_at1/116+20735010..20743699retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g35560Os.14895.1.S1_at11/116+20750065..20751958Reticuline oxidase precursor, putative, expressed
LOC_Os06g35570OsAffx.27952.1.S1_at11/116+20755221..20755825hypothetical protein
LOC_Os06g35570OsAffx.15200.2.S1_x_at1/116+20755221..20755825hypothetical protein
LOC_Os06g35574Os.55223.1.S1_at11/116+20759709..20760605expressed protein
LOC_Os06g35580NANA6+20762726..20764144retrotransposon protein, putative, unclassified
LOC_Os06g35590Os.12317.1.S1_at11/116+20766659..20768687Reticuline oxidase precursor, putative, expressed
LOC_Os06g35600OsAffx.16354.1.S1_x_at1/116+20771755..20774043Transposable element protein, putative, Retrotrans_gag
LOC_Os06g35610NANA6+20775767..20776162hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27952.1.S1_at--1111--9491Chr06:20755737..20755761 (25 bp)
TCTCTCATATGTCGCTGGGAGCAGC
LOC_Os06g35570
OsAffx.27952.1.S1_at--1106--5931Chr06:20755719..20755743 (25 bp)
GAGCAGCGACTAGGTGGCCAGTGAT
LOC_Os06g35570
OsAffx.27952.1.S1_at--922--1051Chr06:20755708..20755732 (25 bp)
AGGTGGCCAGTGATGGGCGCGGCAA
LOC_Os06g35570
OsAffx.27952.1.S1_at--899--3471Chr06:20755481..20755687 (25 bp)
CAGGCGGAGGGCGTGTGCAGCGACG
LOC_Os06g35570
OsAffx.27952.1.S1_at--640--7492Chr06:20755396..20755420 (25 bp)
GTGGTGGTCCGGACAAACAAGGTCT
LOC_Os06g35570
OsAffx.27952.1.S1_at--480--7251Chr06:20755390..20755414 (25 bp)
GTCCGGACAAACAAGGTCTCGGTGG
LOC_Os06g35570
OsAffx.27952.1.S1_at--816--5411Chr06:20755322..20755346 (25 bp)
GAACCAGCTTCCTCGGAGCGTGAGT
LOC_Os06g35570
OsAffx.27952.1.S1_at--171--1551Chr06:20755317..20755341 (25 bp)
AGCTTCCTCGGAGCGTGAGTACTCT
LOC_Os06g35570
OsAffx.27952.1.S1_at--192--5891Chr06:20755307..20755331 (25 bp)
GAGCGTGAGTACTCTGTCGTGCGCA
LOC_Os06g35570
OsAffx.27952.1.S1_at--227--7391Chr06:20755303..20755327 (25 bp)
GTGAGTACTCTGTCGTGCGCAGCAC
LOC_Os06g35570
OsAffx.27952.1.S1_at--1089--1171Chr06:20755300..20755324 (25 bp)
AGTACTCTGTCGTGCGCAGCACCAA
LOC_Os06g35570
Target Sequence 
TCTCTCATATGTCGCTGGGAGCAGCGACTAGGTGGCCAGTGATGGGCGCGGCAAGCGGCGGGCATGGCGGAAAGCAGGCG
GAGGGCGTGTGCAGCGACGGTGGTCGAGGCGGAGAAGGTGGCGGCGGCGGTCCGGGCGAAGAAGGCGGCGACGTCGGCGG
TGGTGGTCCGGACAAACAAGGTCTCGGTGGGGGAGGACGGCTGGTGGGCCCGGCGGAGGGGTGGCGGGGAGGGGAACCAG
CTTCCTCGGAGCGTGAGTACTCTGTCGTGCGCAGCACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis