Browse Element(s) Details


OsAffx.21076.1.S1_at

Description tigr:9635.m00158
TID=OsAffx.21076.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0252011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02490OsAffx.15220.1.S1_s_at11/117+863342..869930retrotransposon protein, putative, unclassified
LOC_Os07g02490OsAffx.15220.2.S1_s_at8/117+863342..869930retrotransposon protein, putative, unclassified
LOC_Os07g02500OsAffx.617.1.A1_x_at11/117+871299..872596hypothetical protein
LOC_Os07g02500OsAffx.617.1.A1_at11/117+871299..872596hypothetical protein
LOC_Os07g02510OsAffx.19542.3.S1_x_at7/117+878723..882945retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g02520OsAffx.21076.1.S1_at11/117+893613..895976hypothetical protein
LOC_Os07g02530OsAffx.21075.1.S1_at9/117+897399..898078hypothetical protein
LOC_Os07g02540OsAffx.16049.1.S1_at11/117+907899..909184acetyltransferase, GNAT family protein, expressed
LOC_Os07g02540OsAffx.16049.1.S1_x_at11/117+907899..909184acetyltransferase, GNAT family protein, expressed
LOC_Os07g02540OsAffx.3615.1.S1_s_at1/117+907899..909184acetyltransferase, GNAT family protein, expressed
LOC_Os07g02550NANA7+916698..917609hypothetical protein
LOC_Os07g02560OsAffx.21075.2.S1_at11/117+918200..919735NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21076.1.S1_at--226--6911Chr07:895412..895436 (25 bp)
GTACGCTTCGACAAGTTACCATGGC
LOC_Os07g02520
OsAffx.21076.1.S1_at--281--10051Chr07:895445..895469 (25 bp)
TAGTACCATTATCCCCGAATCAAAG
LOC_Os07g02520
OsAffx.21076.1.S1_at--1107--1831Chr07:895501..895525 (25 bp)
ACGCTGCGACAGGTTGCTACGACAA
LOC_Os07g02520
OsAffx.21076.1.S1_at--449--931Chr07:895581..895605 (25 bp)
AGGCAGTATCGTGTTGTGGCCACCG
LOC_Os07g02520
OsAffx.21076.1.S1_at--615--1791Chr07:895602..895626 (25 bp)
ACCGCTCTATCCAAGTACTGCATGT
LOC_Os07g02520
OsAffx.21076.1.S1_at--1065--10851Chr07:895629..895653 (25 bp)
TTGGTAGCTTATGTGCCTCAGCTGC
LOC_Os07g02520
OsAffx.21076.1.S1_at--987--1131Chr07:895666..895690 (25 bp)
AGTCCTACACAACATCTGTCTACAA
LOC_Os07g02520
OsAffx.21076.1.S1_at--991--7151Chr07:895683..895707 (25 bp)
GTCTACAACGATTTTGTGCGCTCGC
LOC_Os07g02520
OsAffx.21076.1.S1_at--191--2091Chr07:895714..895738 (25 bp)
ACATCTTGCAGAGTGGTACCCAGCT
LOC_Os07g02520
OsAffx.21076.1.S1_at--1101--1031Chr07:895786..895810 (25 bp)
AGGTGCTAGCTGATTTCTGGGTCGA
LOC_Os07g02520
OsAffx.21076.1.S1_at--501--10611Chr07:895800..895824 (25 bp)
TTCTGGGTCGAGATGTTGCTCTACC
LOC_Os07g02520
Target Sequence 
GTACGCTTCGACAAGTTACCATGGCGGTAGCGCTAGTACCATTATCCCCGAATCAAAGGGCAATCAAGCCAGCATCATCT
TGACCTGGCACGCTGCGACAGGTTGCTACGACAAAGACTATGAGCAAAGGAAGAAGATGAAGGCTACTACAGAATCGCCG
CTACAGCACAGGCAGTATCGTGTTGTGGCCACCGCTCTATCCAAGTACTGCATGTACTTGGTAGCTTATGTGCCTCAGCT
GCTGCCCGGGCAGCAGTCCTACACAACATCTGTCTACAACGATTTTGTGCGCTCGCCGTCCTACATCTTGCAGAGTGGTA
CCCAGCTGAAAGATGAGCTCTGCGAGGCGGTGGTGGAAGATGAACTGAGGTGGAAGGTGCTAGCTGATTTCTGGGTCGAG
ATGTTGCTCTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21076.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis